BS22603.complete Sequence
2144 bp assembled on 2011-02-15
GenBank Submission: KX802452
> BS22603.complete
GAAGTTATCAGTCGACATGGTTGCATTGAGCACAAACGGCCGCCGGGAGG
AGAAGGCTGCAGCCAACATCTACGATGACAAACGGATCTTTCCCGACTTC
CGTAGCGGACCTTTGGAAGAGTACCGTGAGCGGGCTAGCTTCTGCTACAA
GCGCATGAACGTGGTGCTCGAGGGCGAGGATCACATACGGCTGAAGCACA
AGGTGTGGCAATGGATGGAACAGCACCCCGACTACCAGCGGGAGCCAGGA
TCCGATTTGGAACGCACCCGCGAAATGGCCAACAAGCGGCAGCATCTTCT
GTGGGAGCAACAGTTCTACGGCGTCAACGAGTATCTTGGAACCCCACATC
TTCTGCTTGCTTTCGGACAGGCCATCTTTAGCTACGATTTCAGCACTTCG
GTCAAGTTCGGCCTTTCAACTGGCATGTTCCCCAGCACGCTGGTCTCCAA
CGGATCTGGCCGCCTGGGCAAGTACGTGGCCAAGATCGCGGACAACCGCA
TTTTGGGCGCCTACGCTCTCACTGAGATTTCTCACGGCACCAACGCGCTC
GGCATGCGCACCCGTGCCACCTACGATGTGAAAAGGCAGGAGTTTATCAT
CCACACGCCAGACTTCGAGGCGGCCAAGTGTTGGGTCGGTAATCTAGGCA
AGACTTGCACGCACGCAATCGTCTACGCCCAGCTGTACGTGCCGGATGAC
AAGCACCAGGGCCTGCAGGCCTTCCTTGTTCCCATTCGGGACGAGCGTAC
ATTGCTTCCATTCCCCGGCGTAACCGTCGGCGATATGGGCGAAAAGATCG
GTCTCAATGGCATTGATAACGGATTTGTGATGTTCAACCAGTATCGTATC
CCTAAGGCAAATCTGCTGTCCAAGACCGGTGACATCGATGCGCAGGGAAA
CTACACCAGTAAAATTAAGGACGAGCGTAAGCGCCTTGGCGCCTCCTTGG
GTGCCCTCTCCGTGGGTCGCGTCAATATCACTGCTATCACGTATGTGGCC
TTGAGCAAGGCTGTGACAATTGCCACTCGCTATGCGGCCAGCAGACGCCA
GTTTGGCCCTACCAACAGCCCGGCGGAGTGGCCCGTGATCGAGTATCAGT
CACAGCAATACCGACTAATTCCCCACTTGGCCACCACAATCGCCTTGCGG
GTGGCCACACTCTGGATAGGCAAAGAGAACGTGGATTTGACCATGAAGGG
CTTCACTGGCGAGGACACGTCGCAAGCGGGCATGGAGATCCATGCGATCT
CATCGGCACTCAAACCAGTTGCCACTTGGGCTGCCAGGGATGGCATCCAG
GAATGCCGCGAGGCCTGTGGCGGTCATGGCTATCTTAAATCTTCTGGCTT
GGGCGAACTTCGCAACGACAACGATGCCAACTGCACCTATGAGGGCGAGA
ACAACACGCTCATCCAGCAAGCGTCCAATTGGTTGATCAGTCTGCAACGC
AACAATGCCGACTTCGTGGCAGTTTCCCCATTGGAGACAGTCTCCTTCCT
GAAGGATATGGACACAATTCTGCAAAGCAAGGGTCAGGAGCGAACTCCTG
CCGAAGTTTTGGATCCGCTCAATCTACTTAATGCCCTCAACTGGCTTACC
GTCTGGCAACTGGATACGACGGTGAAACGAGTTGAGGAACAGCAGCGCGA
AGGAAAGGATGCCTTTGAGACGAGGAACAACATCCAGGTCTTTGCCGCCC
AGAAGCTCTCCATTATCTACGGCGAGCGCACCATCTACTACGTGTTTTAT
AAGTTTGTAATTGGTCTGCCCGACTCTGCTGAGAAGAAGGTACTGCAGCA
GGTGCTCTCCTTCTATGGCGCCCACTTGGTCACAAAGTACTCCGCTGCTT
TCTACCGCGGTGGTTACTTCCGCGAAAACTCTAACCAACTGGAGCTGTAC
GAACAGGGCATTCTGGCTCTGCTTCCCCTGCTGAAGAACGAAGCCATTGC
TCTGGTGGATGCCATTGCTCCCACAGACTTTATTCTAAACTCTCCTCTGG
GCATGAGCGATGGAAACGTCTACCAGCATCTGCAGCGCACGCTTGTCTCC
ACTCCAGGTGTCTACGAGCGTCCTCATTGGTGGCGTGATGTTACCTACAA
GGATTACCTTAAGCGCGCCAAATTGTAGAAGCTTTCTAGACCAT
BS22603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9527-RD | 2112 | CG9527-PD | 1..2112 | 17..2128 | 10560 | 100 | Plus |
| CG9527-RC | 2112 | CG9527-PC | 1..2112 | 17..2128 | 10560 | 100 | Plus |
| CG9527-RA | 2112 | CG9527-PA | 1..2112 | 17..2128 | 10560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9527-RD | 2361 | CG9527-RD | 60..2174 | 15..2129 | 10575 | 100 | Plus |
| CG9527-RC | 2603 | CG9527-RC | 441..2555 | 15..2129 | 10575 | 100 | Plus |
| CG9527-RA | 2222 | CG9527-RA | 60..2174 | 15..2129 | 10575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6446750..6447242 | 822..330 | 2465 | 100 | Minus |
| 2L | 23513712 | 2L | 6446191..6446674 | 1305..822 | 2405 | 99.8 | Minus |
| 2L | 23513712 | 2L | 6445285..6445579 | 2019..1725 | 1475 | 100 | Minus |
| 2L | 23513712 | 2L | 6445861..6446134 | 1571..1298 | 1370 | 100 | Minus |
| 2L | 23513712 | 2L | 6447607..6447766 | 196..37 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 6445642..6445796 | 1726..1572 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 6447301..6447437 | 331..195 | 685 | 100 | Minus |
| 2L | 23513712 | 2L | 6445118..6445229 | 2129..2018 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 19392526..19392584 | 645..587 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:48 has no hits.
BS22603.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:57 Download gff for
BS22603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9527-RA | 56..2167 | 17..2128 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:50 Download gff for
BS22603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9527-RA | 62..2173 | 17..2128 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:45 Download gff for
BS22603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9527-RA | 62..2173 | 17..2128 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:45 Download gff for
BS22603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6445861..6446131 | 1301..1571 | 100 | <- | Minus |
| 2L | 6445119..6445229 | 2018..2128 | 100 | <- | Minus |
| 2L | 6445287..6445577 | 1727..2017 | 100 | <- | Minus |
| 2L | 6445642..6445796 | 1572..1726 | 100 | <- | Minus |
| 2L | 6446196..6446673 | 823..1300 | 100 | <- | Minus |
| 2L | 6446750..6447240 | 332..822 | 100 | <- | Minus |
| 2L | 6447301..6447435 | 197..331 | 100 | <- | Minus |
| 2L | 6447607..6447766 | 37..196 | 100 | <- | Minus |
| 2L | 6447942..6447961 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:50 Download gff for
BS22603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6445119..6445229 | 2018..2128 | 100 | <- | Minus |
| arm_2L | 6445287..6445577 | 1727..2017 | 100 | <- | Minus |
| arm_2L | 6445642..6445796 | 1572..1726 | 100 | <- | Minus |
| arm_2L | 6445861..6446131 | 1301..1571 | 100 | <- | Minus |
| arm_2L | 6446196..6446673 | 823..1300 | 100 | <- | Minus |
| arm_2L | 6446750..6447240 | 332..822 | 100 | <- | Minus |
| arm_2L | 6447301..6447435 | 197..331 | 100 | <- | Minus |
| arm_2L | 6447607..6447766 | 37..196 | 100 | <- | Minus |
| arm_2L | 6447942..6447961 | 17..36 | 100 | | Minus |
BS22603.pep Sequence
Translation from 16 to 2127
> BS22603.pep
MVALSTNGRREEKAAANIYDDKRIFPDFRSGPLEEYRERASFCYKRMNVV
LEGEDHIRLKHKVWQWMEQHPDYQREPGSDLERTREMANKRQHLLWEQQF
YGVNEYLGTPHLLLAFGQAIFSYDFSTSVKFGLSTGMFPSTLVSNGSGRL
GKYVAKIADNRILGAYALTEISHGTNALGMRTRATYDVKRQEFIIHTPDF
EAAKCWVGNLGKTCTHAIVYAQLYVPDDKHQGLQAFLVPIRDERTLLPFP
GVTVGDMGEKIGLNGIDNGFVMFNQYRIPKANLLSKTGDIDAQGNYTSKI
KDERKRLGASLGALSVGRVNITAITYVALSKAVTIATRYAASRRQFGPTN
SPAEWPVIEYQSQQYRLIPHLATTIALRVATLWIGKENVDLTMKGFTGED
TSQAGMEIHAISSALKPVATWAARDGIQECREACGGHGYLKSSGLGELRN
DNDANCTYEGENNTLIQQASNWLISLQRNNADFVAVSPLETVSFLKDMDT
ILQSKGQERTPAEVLDPLNLLNALNWLTVWQLDTTVKRVEEQQREGKDAF
ETRNNIQVFAAQKLSIIYGERTIYYVFYKFVIGLPDSAEKKVLQQVLSFY
GAHLVTKYSAAFYRGGYFRENSNQLELYEQGILALLPLLKNEAIALVDAI
APTDFILNSPLGMSDGNVYQHLQRTLVSTPGVYERPHWWRDVTYKDYLKR
AKL*
BS22603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9527-PD | 703 | CG9527-PD | 1..703 | 1..703 | 3675 | 100 | Plus |
| CG9527-PC | 703 | CG9527-PC | 1..703 | 1..703 | 3675 | 100 | Plus |
| CG9527-PA | 703 | CG9527-PA | 1..703 | 1..703 | 3675 | 100 | Plus |
| CG9527-PB | 724 | CG9527-PB | 28..724 | 7..703 | 3644 | 99.9 | Plus |
| CG17544-PD | 693 | CG17544-PD | 4..684 | 20..692 | 1237 | 39.4 | Plus |
