BS22635.complete Sequence
3095 bp assembled on 2011-02-18
GenBank Submission: KX800752
> BS22635.complete
GAAGTTATCAGTCGACATGAGTCTTACGTCCGCCGCGGGGATAATTTCCC
TACTCGATGAGCCAATGCCGGATCTTAAGGTGTTCGCCCTCAAAAAGCTG
GACAACATCGTGGATGAGTTCTGGCCGGAGATCTCGGAGTCCATCGAGAA
GATCGAGATGCTGCACGAGGATCGCAGCTTCCCCGAAAACAAGCTAGCTG
GCATGGTGGCCTCCAAGGTGTTCTATCACCTGGGCTCCTTCGAGGACGCT
CTGACGTACGCCCTGGGCGCTGGTGATCTGTTCGACGTGAATGCCCGCAA
TGAGTACACGGAGACCATCATTGCCAAGTGCATCGACTTCTACATTGCCC
AGCGGGTGGAGTTCATCGAGAACCCTAAGGAGGCGAGTGTCGTGGACGAG
CGGCTGGAGGGCATTGTGAACAGGATGATTCAGCGCTGTCTGGACGACAA
CCAGTTCCGCCAGGCTCTGGGCATCGCTCTGGAGACCCGTCGCATGGACA
CCTTCAAGGACGCTATCATGAAGTCGGACGATGTGCGTGGCATGCTGGCC
TACGCCTACAACGTGACCATGTCCCTCATCCAGAACCGTGGCTTCCGCAA
TGAGGTGCTGCGCTGTCTGGTCAGTCTGTACCGTGATCTGGGTGTGCCGG
ACTACGTGAATATGTGTCAGTGCCTCATCTTCCTGGAGGACCCCTTCGCC
GTAGCCGAGATGCTGGACAACCTCACACGGTCCTCGGTGGAGACAAACAA
TCTGATGGCCTATCAGATTGCCTTTGATTTGTACGAGTCGGCCACGCAAG
AGTTTCTGGGCAATGTGCTGCAGCACCTCAAAAACACCGCTCCTATCCCA
ACCGCCCTCCCCAGCACATTTAAGCCCCAGGGTACCACCTCCGAGGATGG
TGCCAAGTCGGAGGGAGACAAGTCCAAGTCTGACGAGGATATCACAGAGG
AGACGCCAGCTGATGATAAAGTAGAGCGCACAATCGATTCCCTTAACGAG
GTTGAAAAGTTGCATCAGAAGAACATTGAAAAGCTCATATCGATCCTCTC
CGGCGAGGTTTCCATCGACCTACAGCTCCAATTCCTCATCCGCAGCAACC
ACGCCGATTTGCAGGTCCTTCGAGGCACAAAGGAAGCGGTCCGCGTGTCT
ATCTGCCACACAGCCACTGTTATTGCCAACGCCTTCATGCACAGCGGCAC
CACCTCCGACCAATTCCTGCGCGACAACCTCGACTGGCTGGCCAGGGCCA
CGAATTGGGCCAAGCTGACGGCAACCGCTTCGCTTGGAGTAATTCATCGG
GGTCACGAGAAGGATTCCCTGGCTCTCATGCAGAGCTATCTGCCAAAGGA
GGCCGGTCCAAGTTCTGGTTACTCTGAGGGTGGTGCCCTTTATGCTTTGG
GCTTGATCCATGCGAATCACGGAGCTAACATTATAGACTACCTGCTGCAA
CAGCTGAAGGATGCCCAAAACGAGAATGTGCGTCATGGCGGCTGCCTGGG
ACTAGGTCTCGCTGGCATGGGCACCCATCGCCAGGATCTGTATGAGCAGC
TGAAGTTTAATTTGTATCAGGATGACGCGGTTACCGGAGAGGCGGCGGGC
ATTGCCATGGGTATGGTCATGCTGGGCTCCAAGAACGCCCAGGCCATCGA
GGACATGGTGTCGTATGCGCAGGAGACGCAGCACGAGAAGATCCTACGCG
GCCTAGCCGTGGGCATCTCCCTCACAATGTTCTCTCGTTTGGAGGAGGCC
GACCCCCTGGTGACCAGCCTGTCTTCCGACAAGGATCCTGTGTTGCGCCG
CTCGGGAATGTACACCATAGCTATGGCCTACAATGGTACTGGTAGCAACA
AGGCCATCCGCAAGCTGCTACACGTGGCCGTCTCCGACGTAAATGATGAT
GTGCGACGTGCTGCTGTGACAGCCATCGGCTTCATCCTGTTCCGCTCTCC
GGAGCAGTGTCCCTCTGTGGTCAGCCTTCTGGCAGAGTCCTACAACCCGC
ACGTTCGTTACGGAGCCGCAATGGCTCTTGGTATCGCCTGTGCCGGCACA
GGTTTGCGTGAGGCCATTGCCCTGCTGGAGCCAATGGTGAAGTTCGATCC
GGTCAACTTTGTGCGCCAGGGAGCTTTGATCGCCTCTGCCATGATCCTGA
TTCAGCACACGGACCAGAGCTGTCCCAAGTCCACCTTCTTCCGTCAGCTG
TACGCCGAGGTCATTAGCAACAAGCACGAAGATGTGATGGCGAAGTACGG
TGCCATTTTGGCTCAGGGTATTATTGATGCTGGTGGCCGAAACGCTACTC
TGTCCCTGCAGTCCCGTACAGGACACACCAACCTGCAGGCAGTGGTGGGC
ATGCTGGCTTTCACCCAGTACTGGTACTGGTTCCCCCTGGCCCACACCCT
TTCCCTTGCCTTCACACCCACCTGTGTGATCGGCCTGAACTCCGATCTGA
AAATGCCCAAGATGGAGTACAAGTCGGCGGCCAAGCCCTCGTTATACGCA
TATCCCGCCCCACTGGAGGAGAAGAAGAGCGAGGAGCGCGAGAAGGTGGC
CACCGCAGTTCTGTCCATTGCCGCCCGCCAGAAGAGACGCGAGAATGCCG
ACAAAAAAGAGGATGAGAAGATGGATGTGGACGAGGACAGCAAGGAGGGT
GCTGCTGTCAAGAAGGACGAAGAAGCCAAGGCCGATGAGAAGATGGTAAC
GGATGAGAAACCCAAGAAGAAGGATGAGAAGGAAAAGAAAAAGGAAGAGG
ATAAGGAAAAGGAGGCAGCTGGCACCAGCAGCGAAAAGGATAAGGATAAG
GAGAAGGACAAGAAGGAGAAGAAGGAGCCAGAGCCGACCTCCGAAATCCT
GCAGAATCCCGCGCGCGTTCTTCGCCAGCAACTGAAGGTCCTTAGCGTTA
TTGATGGCCAGTCGTATGAGCCGCTGAAGGATGTCACTATCGGTGGAATT
ATTGTATTCCAGCACACTGGCAAAGCAGAGGACCAGGAGCTCGTTGAGCC
AGTTGCCGCATTTGGACCGATGAACGACGAGGAAAAGGAGCCGGAGCCCC
CAGAGCCCTTTGAGTACATCGAGGACTAAAAGCTTTCTAGACCAT
BS22635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn2-RB | 3090 | CG11888-PB | 1..3064 | 17..3080 | 15305 | 100 | Plus |
| Rpn2-RC | 3063 | CG11888-PC | 1..3063 | 17..3079 | 15300 | 100 | Plus |
| Rpn2-RA | 3063 | CG11888-PA | 1..3063 | 17..3079 | 15300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn2-RC | 3412 | CG11888-RC | 208..3271 | 17..3080 | 15305 | 100 | Plus |
| Rpn2-RB | 3325 | CG11888-RB | 121..3184 | 17..3080 | 15305 | 100 | Plus |
| Rpn2-RA | 3325 | CG11888-RA | 121..3184 | 17..3080 | 15305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29154734..29156046 | 958..2270 | 6565 | 100 | Plus |
| 3R | 32079331 | 3R | 29153731..29154673 | 17..959 | 4715 | 100 | Plus |
| 3R | 32079331 | 3R | 29156301..29157114 | 2267..3080 | 4055 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:50:41 has no hits.
BS22635.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:55 Download gff for
BS22635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn2-RA | 182..3242 | 17..3077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:45 Download gff for
BS22635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn2-RA | 121..3181 | 17..3077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:26 Download gff for
BS22635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn2-RA | 121..3181 | 17..3077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:26 Download gff for
BS22635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29153731..29154673 | 17..959 | 100 | -> | Plus |
| 3R | 29154736..29156043 | 960..2267 | 100 | -> | Plus |
| 3R | 29156302..29157111 | 2268..3077 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:45 Download gff for
BS22635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24979453..24980395 | 17..959 | 100 | -> | Plus |
| arm_3R | 24980458..24981765 | 960..2267 | 100 | -> | Plus |
| arm_3R | 24982024..24982833 | 2268..3077 | 99 | | Plus |
BS22635.pep Sequence
Translation from 16 to 3078
> BS22635.pep
MSLTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLH
EDRSFPENKLAGMVASKVFYHLGSFEDALTYALGAGDLFDVNARNEYTET
IIAKCIDFYIAQRVEFIENPKEASVVDERLEGIVNRMIQRCLDDNQFRQA
LGIALETRRMDTFKDAIMKSDDVRGMLAYAYNVTMSLIQNRGFRNEVLRC
LVSLYRDLGVPDYVNMCQCLIFLEDPFAVAEMLDNLTRSSVETNNLMAYQ
IAFDLYESATQEFLGNVLQHLKNTAPIPTALPSTFKPQGTTSEDGAKSEG
DKSKSDEDITEETPADDKVERTIDSLNEVEKLHQKNIEKLISILSGEVSI
DLQLQFLIRSNHADLQVLRGTKEAVRVSICHTATVIANAFMHSGTTSDQF
LRDNLDWLARATNWAKLTATASLGVIHRGHEKDSLALMQSYLPKEAGPSS
GYSEGGALYALGLIHANHGANIIDYLLQQLKDAQNENVRHGGCLGLGLAG
MGTHRQDLYEQLKFNLYQDDAVTGEAAGIAMGMVMLGSKNAQAIEDMVSY
AQETQHEKILRGLAVGISLTMFSRLEEADPLVTSLSSDKDPVLRRSGMYT
IAMAYNGTGSNKAIRKLLHVAVSDVNDDVRRAAVTAIGFILFRSPEQCPS
VVSLLAESYNPHVRYGAAMALGIACAGTGLREAIALLEPMVKFDPVNFVR
QGALIASAMILIQHTDQSCPKSTFFRQLYAEVISNKHEDVMAKYGAILAQ
GIIDAGGRNATLSLQSRTGHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFT
PTCVIGLNSDLKMPKMEYKSAAKPSLYAYPAPLEEKKSEEREKVATAVLS
IAARQKRRENADKKEDEKMDVDEDSKEGAAVKKDEEAKADEKMVTDEKPK
KKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQNPAR
VLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAEDQELVEPVAAFG
PMNDEEKEPEPPEPFEYIED*
BS22635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn2-PC | 1020 | CG11888-PC | 1..1020 | 1..1020 | 5193 | 100 | Plus |
| Rpn2-PB | 1029 | CG11888-PB | 1..1020 | 1..1020 | 5193 | 100 | Plus |
| Rpn2-PA | 1020 | CG11888-PA | 1..1020 | 1..1020 | 5193 | 100 | Plus |
| Rpn1-PA | 919 | CG7762-PA | 325..616 | 333..620 | 187 | 25.2 | Plus |
