BS22652.complete Sequence
1307 bp assembled on 2011-01-25
GenBank Submission: KX802732
> BS22652.complete
GAAGTTATCAGTCGACATGAAGTTCTCTCTGGGTTTGTTAGTCCTCTTTT
TGGGCGCCACTCTTGTGGCTGCCGAACAGGATTACGAGGGTTACCGCATC
TATGAGGTGATTCCATCGACTGCCGACCAGGCTGACCTTTTGCACCAACT
AAGTCTGCAGGGATACGATTTCATCAGTGAGACTCGTCTATTGGGTCATC
CTTCTCGTGTGATTGTGAGTCCCGCTCAGTTGAAGCACTTCCAGCAGCTG
GTTGAGGCAGAGAAAATGACACTTACTCTGGTGAACTCCAACCTGGGCGC
CTCCATAGCCGAGGAGTTTGCCCAGCGACAGATGCAGCGCCTTTTGGCGC
CCATCACGGGAAAGGGTCGCTTGAGCACGGAGCGCTACTATACGCACGAG
GAGATTATCAACTATATCGATGACCTGGCCCAGCGTTTTCCCAGCCGAGT
CTTCGTTAAGACCGTTGGCTGGTCCTATGAACAGCGAGTCCTGAAAACCA
TCACCATCACCAATGGCGATGGCAAGGCTAACAAGAAAGTGATCTTCATG
GATGGTGGTTTCCATGCTAGGGAATGGATTTCTCCAGCAGCAGTCCTCTA
CGTCATCGATCAATTGGTGGAGCAGTTCGAGGAGAACGCTCATCTGCTGA
AGGACTACGACTGGGTCATCCTGCCACTGGTCAATGCCGATGGCTATGAG
CACACCCAGACCGGAACACTTGCTCGAATGTGGCGCAAAACCCGTCAGCC
ATACACGTACGCTGGACAGACGTGTTACGGAGCTGATCCCAACCGGAATT
TCGACTTCCATTGGAACGAGGAGGGCGCCTCCTCGAATCCATGTGCGGAC
ACCTATGCTGGACCGACGGCCTTTTCCGAACCGGAGACGATTACCGTCCG
GGATCTGATGCACTCACTGGCCGATCGGGGAATTATGTACCTCACCCTCC
ACTCCTACGGCAACTATCTGCTGTATCCATGGGGATGGACGTCCGATCTG
CCCGAGAATTGGGAGGATCTGGATGCGGTAGCCCGCACTGGAGCTGAGGC
CATTGAGAACGCCACTGGTACGGTGTACACCTATGGATCCTCCACAAATG
TCCTGTATATTGCTGCTGGAGCCAGTGATGACTATGGCTACTATGCCGGC
TTCAATGTGTCCATCACCATGGAGTTGCCCGGTGCTGGCTCCATTGGATT
CAATCCTCCAGTCACCCGAATCGATGAGTTTGTCACCGAAACCTGGATTG
GCATCCGTGCCATGGCCGAGAAAGTGATCGAGATGTATTAAAAGCTTTCT
AGACCAT
BS22652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8562-RA | 1275 | CG8562-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
| CG8560-RB | 1257 | CG8560-PB | 478..680 | 497..699 | 310 | 76.8 | Plus |
| CG8560-RA | 1257 | CG8560-PA | 478..680 | 497..699 | 310 | 76.8 | Plus |
| CG8560-RB | 1257 | CG8560-PB | 904..969 | 938..1003 | 225 | 89.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8562-RA | 1483 | CG8562-RA | 21..1296 | 17..1292 | 6380 | 100 | Plus |
| CG8560-RB | 1334 | CG8560-RB | 524..726 | 497..699 | 310 | 76.8 | Plus |
| CG8560-RA | 1566 | CG8560-RA | 756..958 | 497..699 | 310 | 76.8 | Plus |
| CG8560-RB | 1334 | CG8560-RB | 950..1015 | 938..1003 | 225 | 89.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7398463..7399366 | 90..993 | 4520 | 100 | Plus |
| 3L | 28110227 | 3L | 7399427..7399725 | 994..1292 | 1495 | 100 | Plus |
| 3L | 28110227 | 3L | 7398305..7398378 | 17..90 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 7403007..7403209 | 699..497 | 310 | 76.8 | Minus |
| 3L | 28110227 | 3L | 7400633..7400851 | 491..709 | 300 | 75.8 | Plus |
| 3L | 28110227 | 3L | 7402728..7402783 | 993..938 | 205 | 91.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:25:27 has no hits.
BS22652.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:14:58 Download gff for
BS22652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8562-RA | 18..1290 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:18 Download gff for
BS22652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8562-RA | 21..1293 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:00 Download gff for
BS22652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8562-RA | 21..1293 | 17..1289 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:00 Download gff for
BS22652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7399427..7399722 | 994..1289 | 100 | | Plus |
| 3L | 7398464..7399366 | 91..993 | 100 | -> | Plus |
| 3L | 7398305..7398378 | 17..90 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:18 Download gff for
BS22652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7391564..7392466 | 91..993 | 100 | -> | Plus |
| arm_3L | 7391405..7391478 | 17..90 | 100 | -> | Plus |
| arm_3L | 7392527..7392822 | 994..1289 | 100 | | Plus |
BS22652.pep Sequence
Translation from 16 to 1290
> BS22652.pep
MKFSLGLLVLFLGATLVAAEQDYEGYRIYEVIPSTADQADLLHQLSLQGY
DFISETRLLGHPSRVIVSPAQLKHFQQLVEAEKMTLTLVNSNLGASIAEE
FAQRQMQRLLAPITGKGRLSTERYYTHEEIINYIDDLAQRFPSRVFVKTV
GWSYEQRVLKTITITNGDGKANKKVIFMDGGFHAREWISPAAVLYVIDQL
VEQFEENAHLLKDYDWVILPLVNADGYEHTQTGTLARMWRKTRQPYTYAG
QTCYGADPNRNFDFHWNEEGASSNPCADTYAGPTAFSEPETITVRDLMHS
LADRGIMYLTLHSYGNYLLYPWGWTSDLPENWEDLDAVARTGAEAIENAT
GTVYTYGSSTNVLYIAAGASDDYGYYAGFNVSITMELPGAGSIGFNPPVT
RIDEFVTETWIGIRAMAEKVIEMY*
BS22652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8562-PA | 424 | CG8562-PA | 1..424 | 1..424 | 2236 | 100 | Plus |
| CG8560-PB | 418 | CG8560-PB | 7..418 | 9..424 | 1154 | 55 | Plus |
| CG8560-PA | 418 | CG8560-PA | 7..418 | 9..424 | 1154 | 55 | Plus |
| CG18417-PA | 427 | CG18417-PA | 8..424 | 5..424 | 1129 | 54.1 | Plus |
| CG32379-PB | 344 | CG32379-PB | 44..342 | 124..424 | 821 | 50.8 | Plus |
