Clone BS22660 Report

Search the DGRC for BS22660

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:226
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG9548-RA
Protein status:BS22660.pep: full length peptide match
Sequenced Size:368

Clone Sequence Records

BS22660.complete Sequence

368 bp assembled on 2011-01-25

GenBank Submission: KX804026

> BS22660.complete
GAAGTTATCAGTCGACATGGCCAAACATCATCCGGATTTGATTTTCTGCC
GCAAGCAGCCCGGCGTGGCCATTGGACGCCTGTGTGAAAAAGACGATGGA
AAGTGTGTGATCTGCGACTCCTACGTGCGGCCATGCACACTGGTGCGGAT
CTGCGACGAGTGCAACTACGGATCCTACCAGGGCAGGTGCGTCATCTGTG
GAGGACCCGGAGTGTCGGATGCCTACTACTGCAAGTCCTGCACCATTCAG
GAAAAGGACCGCGACGGATGCCCCAAGATTGTAAATCTAGGCAGCTCCAA
GACTGACCTGTTCTACGAACGCAAGAAATATGGCTTCAAACAGAACTATT
AAAAGCTTTCTAGACCAT

BS22660.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9548-RA 336 CG9548-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9548-RA 483 CG9548-RA 86..422 16..352 1685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6490439..6490630 259..68 960 100 Minus
2L 23513712 2L 6490288..6490373 345..260 430 100 Minus
2L 23513712 2L 6490706..6490758 68..16 265 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:25:22 has no hits.

BS22660.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:14:58 Download gff for BS22660.complete
Subject Subject Range Query Range Percent Splice Strand
CG9548-RA 72..405 17..350 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:17 Download gff for BS22660.complete
Subject Subject Range Query Range Percent Splice Strand
CG9548-RA 87..420 17..350 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:59 Download gff for BS22660.complete
Subject Subject Range Query Range Percent Splice Strand
CG9548-RA 87..420 17..350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:59 Download gff for BS22660.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6490282..6490373 260..350 96 <- Minus
2L 6490439..6490629 69..259 100 <- Minus
2L 6490706..6490757 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:17 Download gff for BS22660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6490282..6490373 260..350 96 <- Minus
arm_2L 6490439..6490629 69..259 100 <- Minus
arm_2L 6490706..6490757 17..68 100   Minus

BS22660.pep Sequence

Translation from 16 to 351

> BS22660.pep
MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECN
YGSYQGRCVICGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFY
ERKKYGFKQNY*

BS22660.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9548-PA 111 CG9548-PA 1..111 1..111 633 100 Plus