BS22666.complete Sequence
1589 bp assembled on 2011-01-25
GenBank Submission: KX803445
> BS22666.complete
GAAGTTATCAGTCGACATGATTGCTAGTTCAAAAATGTTACTTTCTGCAT
CGATCCTAATATATTTCTTGCTGAATCTGCAATCTTCGAGTGCTGAGATT
GCCGACTGCAGTTTCTATGATACCGTTGATATCTCGGAAGGCCAGAGGCT
CTCGAATGGATCATACCTCTACGAGGGATTACTTATTCCCGCCCATTTGA
CGGCCAAGTATGAATTCAAGCTTCTGGCGAATGGAGATAAGGAGCAGGTG
CCAAGTCACGTGAGAGGATGTGTGTGCAAGCTAAGGACTTGCGTCAGGTT
TTGCTGCCCACATGACCACATAATGGATATGGGCGAATGCTACGCCAACA
TGACGACGGAGGAGAACGAATTACTGGACCCCATGCTAAATGTGACCCTG
GACGACGGATCAGTGGTGCAAAGGCACTATAAGAAGGAGCTCATGGTGCA
GTGGGATCTGCCAAAGCCCTGCGATGATATGTTTTACCTAGACAACCGGG
ATATAATGGATGAGTACACCTTGTTCGAGAATGGAAGATTGCTGCGCCAC
TACGATCAAGTGTATTTGGACAAGTCGGAGTACTGTCTGCAGCACCGAAC
ATTCGGCGAAGGTAACAACAACTCCATTCGCATTATACCCCACAACTGCT
TGATACTGCCATCCAGAACGGGACAGACCGTTGTGATGATCACATCGTTG
ATATGCTTGGTTCTTACCATCGCCGTGTACCTGTGCGTTAAGAAACTAAT
GAATTTGGAGGGCAAGTGTTTCATCTGTTACATGATGTGCCTATTTTTCG
GATACCTGTTCCTACTCCTTGATCTGTGGGAGTTATCGCTCGATTTCTGT
AAAGCAGCAGGTTTCTTGGGATACTTTTTCGTCATGGCTGCGTTCTTTTG
GCTATCTATCATCAGTCGGCACTATTGGAAATGTCTTACCAATCCCTGTG
CCTCGATGAACATTCGGTCAGAACGTGCGTTTCTGCTATACAGCTGCTTC
GCCTGGGCAATGCCTTTGGCCTTGACCGGAGTCACCTATCTGGCTGATAA
CGTTGTGAACAACGAGGAGTGGCAGCCTCGCGTGGGCGACGAAGGGCATT
GCTGGATCTATACTAAAAGCTGGTCTGCAATGGTGTACTTCTATGGACCG
ATGGTGCTCCTGATTCTCTTCAACATAACTATGTTTGTTCTGACGGCTAA
ACACATAATAGATTCCAAGAGGACTCTTCGAAAGATTGCTCGCAATGAAG
GTAGAATACAGAAGCTGAATTCGGACAAACAGAATTACACACAATTTCTG
CTGCTCTTCACTGTGATGGGGATGTCGTGGAGCTTTGAGATATTCTCCTA
CTTGGTGCAACGCGAGAAACTGTGGGTCAATATCTTTCTGGTAGCTGACT
ACTTCAACTGGTCCCAAGGCGTCATTATATTTGTGCTATTCATTCTGCGG
CGCAAAACTCTTGTACTATTCAAGAAACAAATATTTCCCAAACAGAGAGC
CTTTAGTAGATCTGCAACTCAAAGTACGATTGAATCCATTTCTCAAACAA
AAAGGCATTTTAACATGACATAGAAGCTTTCTAGACCAT
BS22666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl2-RB | 1557 | CG17795-PB | 1..1557 | 17..1573 | 7770 | 99.9 | Plus |
| mth-RE | 1545 | CG6936-PE | 217..908 | 239..930 | 790 | 74.3 | Plus |
| mth-RB | 1569 | CG6936-PB | 217..908 | 239..930 | 790 | 74.3 | Plus |
| mth-RE | 1545 | CG6936-PE | 1004..1435 | 1023..1454 | 390 | 72.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl2-RB | 2035 | CG17795-RB | 105..1661 | 17..1573 | 7770 | 99.9 | Plus |
| mth-RE | 2420 | CG6936-RE | 817..1508 | 239..930 | 790 | 74.3 | Plus |
| mth-RB | 1882 | CG6936-RB | 364..1055 | 239..930 | 790 | 74.3 | Plus |
| mth-RE | 2420 | CG6936-RE | 1604..2035 | 1023..1454 | 390 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5604894..5605406 | 17..529 | 2565 | 100 | Plus |
| 3L | 28110227 | 3L | 5605920..5606174 | 858..1112 | 1275 | 100 | Plus |
| 3L | 28110227 | 3L | 5606472..5606666 | 1285..1479 | 975 | 100 | Plus |
| 3L | 28110227 | 3L | 5605685..5605865 | 683..863 | 890 | 99.4 | Plus |
| 3L | 28110227 | 3L | 5606239..5606410 | 1113..1284 | 860 | 100 | Plus |
| 3L | 28110227 | 3L | 5605468..5605623 | 528..683 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 5606723..5606816 | 1480..1573 | 470 | 100 | Plus |
| 3L | 28110227 | 3L | 345375..345665 | 529..239 | 330 | 74.2 | Minus |
| 2R | 25286936 | 2R | 17446960..17447119 | 309..150 | 230 | 76.2 | Minus |
Blast to na_te.dros performed 2014-11-26 16:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 4806..4914 | 1466..1574 | 113 | 59.8 | Plus |
BS22666.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:14:59 Download gff for
BS22666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl2-RB | 107..1663 | 17..1573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:24 Download gff for
BS22666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl2-RB | 105..1661 | 17..1573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:04 Download gff for
BS22666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl2-RB | 105..1661 | 17..1573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:04 Download gff for
BS22666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5605923..5606174 | 861..1112 | 100 | -> | Plus |
| 3L | 5606239..5606410 | 1113..1284 | 100 | -> | Plus |
| 3L | 5606472..5606666 | 1285..1479 | 100 | -> | Plus |
| 3L | 5606723..5606816 | 1480..1573 | 100 | | Plus |
| 3L | 5604894..5605406 | 17..529 | 100 | -> | Plus |
| 3L | 5605470..5605623 | 530..683 | 100 | -> | Plus |
| 3L | 5605686..5605862 | 684..860 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:24 Download gff for
BS22666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5597994..5598506 | 17..529 | 100 | -> | Plus |
| arm_3L | 5598570..5598723 | 530..683 | 100 | -> | Plus |
| arm_3L | 5598786..5598962 | 684..860 | 99 | -> | Plus |
| arm_3L | 5599023..5599274 | 861..1112 | 100 | -> | Plus |
| arm_3L | 5599339..5599510 | 1113..1284 | 100 | -> | Plus |
| arm_3L | 5599572..5599766 | 1285..1479 | 100 | -> | Plus |
| arm_3L | 5599823..5599916 | 1480..1573 | 100 | | Plus |
BS22666.pep Sequence
Translation from 16 to 1572
> BS22666.pep
MIASSKMLLSASILIYFLLNLQSSSAEIADCSFYDTVDISEGQRLSNGSY
LYEGLLIPAHLTAKYEFKLLANGDKEQVPSHVRGCVCKLRTCVRFCCPHD
HIMDMGECYANMTTEENELLDPMLNVTLDDGSVVQRHYKKELMVQWDLPK
PCDDMFYLDNRDIMDEYTLFENGRLLRHYDQVYLDKSEYCLQHRTFGEGN
NNSIRIIPHNCLILPSRTGQTVVMITSLICLVLTIAVYLCVKKLMNLEGK
CFICYMMCLFFGYLFLLLDLWELSLDFCKAAGFLGYFFVMAAFFWLSIIS
RHYWKCLTNPCASMNIRSERAFLLYSCFAWAMPLALTGVTYLADNVVNNE
EWQPRVGDEGHCWIYTKSWSAMVYFYGPMVLLILFNITMFVLTAKHIIDS
KRTLRKIARNEGRIQKLNSDKQNYTQFLLLFTVMGMSWSFEIFSYLVQRE
KLWVNIFLVADYFNWSQGVIIFVLFILRRKTLVLFKKQIFPKQRAFSRSA
TQSTIESISQTKRHFNMT*
BS22666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl2-PB | 518 | CG17795-PB | 1..518 | 1..518 | 2762 | 100 | Plus |
| mth-PB | 522 | CG6936-PB | 5..505 | 7..513 | 1733 | 62.2 | Plus |
| mth-PE | 514 | CG6936-PE | 5..506 | 7..507 | 1728 | 62.2 | Plus |
| mth-PA | 514 | CG6936-PA | 5..506 | 7..507 | 1728 | 62.2 | Plus |
| mthl3-PC | 511 | CG6530-PC | 3..485 | 8..489 | 1389 | 54.1 | Plus |
