BS22673.complete Sequence
2264 bp assembled on 2011-02-15
GenBank Submission: KX801375
> BS22673.complete
GAAGTTATCAGTCGACATGGATTCTACTTTAAATATTGAGGAGAAAGAAA
TTGCTACAAAAAATGAAACCCAAATAGATTACGCTGATGAGATTAAAACT
ACTCCCCAAGATAATGATAATCTCAATGAAAAACTCTTGGTATCTTATAT
TGACAGTGGTTTTGATAAACCCGTCACTTCAAGAGATAATAAAGATGATG
ACGATCTAAAAATTGAAGAAAGCGAATCTGAAGACTGTAATTCAGAGAAA
AAAAATACAACAGATTTGGAAGTAAACCCAGCTGCACTAATTGACAAGCC
GTCTTTAGATATTAGCTCATCGGATATGGAGAGAACTGTTGAGATAGAAG
ACTCCGAATCCAATAACCCTATTATTATAGATGCATCTATTAAAACGGAC
CCATTAATATCTGTGGAAAATTTGTCCACCGTTTCTGAGAATAATTTCGA
GTTGGACTTAATAGATGGGAGTACTAATGGTGAAAATTCATCGAATGCGG
AAAACGAATCACCTGTTCAAGACACGTCGAACATTCTAATTAAAGGCGAA
GATGATAAAGCTATCGAAAATTGCAAATCACAGGATACCACTAAATCTTC
GTCGGAAAAAAATGTCAATGACCCAACATCCATTGCATCTGATTTATCGG
CCGAAAACACTAAAGCAGACCTTGTTTCGCTAAATGAACCGAAAACCTAT
GAACCCACAACCATTGCGCCTGATTTGAAGATGGAAAACACAAAAAACAG
CATTCCATCGCCAATTAAGCCTAATGTCAATGACCAAACATCCAGTGCAT
CTGATTTGACGGCCGAAAACACTAAAGCAGACCATGATTCGCTAAATAAA
CCTAAGGATTTTAATAACCAAATTCTGAACATTATATCGGATATAGATAT
AAATATAAAAGCACAGGAAAAAATAACACAGCTTAAAGAACAAGAACTAA
AACTCATTCAGAAACAGAATGATCTGGCAAATGAAATCCATAAGCAGCAG
ATCCTAGCTAAGCAGCTTAGTGCACAAAATCAGCTTAAACAAAATGAATG
TCAAAGTGGAGAGCTCGACTTACACAGTCAATATCAAAATGAGCGCGGCG
GACCCACCTCGACACTGTATCAGGAAAAAAATATAGCCAGTAAAGAATCC
GCTAATGTGTCGAAGACGGTTGATTTGCGAAAAATATTTACACCTGCGAC
CGATGCTGCTGAAATATTACCGAAAAACCATTTTCAGCAGTATCAACAAA
GGCCTGTTCTAAGTCCAAACATTTTGCCGGCGTATTCTGATGCTGGAAAG
CACCGCGTCCAATTGAATATTCATCAAAATCAGCTAATTGAGAAGTATTC
AAAACCAGGACTTCAAGTCGTTCAGTCTCCTTGGAAGGCAGCTTTGCAAA
CTGGTTCAGCGAGCTCAGCCTTTCTAGAGGACACCAAGAGTTTTTCACCG
CCTGCCTTAACACCAATTCCGTCTTCCCAAGCTGGTAGTAAGGACTGGAC
GGACGCTAATGAGCCCATGCCTCATGGTTCTTCAAGGCGCAATACAAATG
CCGTTGCTTCCTCGCCACGATCAGTCATTGTACCATCGAATCCACAAAGG
GATCTTGCATATACACCATGCGTTGCTCAGGGCTGGGGAGGTCGAAGTGT
AGAACTTCCAAAAGGCTTATACGTTCCGAAAGAAATATCTCTCTCAAGTT
ATGCAGCACCTTCACAGCAGTGCGAAATTCACTCGAAACATTTTGAAAGG
CCATACGAAGACACTTTTCCGCGCACGTTTCCAAGGAACAACTACTCAGC
TAATAATAATTTTCCTGGAAATGATGGTATAGGTGAATTTCCTTTATCAA
AGCCAACTGGGTTGACCACTGGAACACTACATCAACAGCCCTACTCACCG
ACTAGCTATAAAAAAACAGTACCTGGGCTCGAAAAAGTTGAGAATTTTGC
TAGGTATGAACAGCCTGATAGGAAAAGATTGACGAGTGGAAGTCCACAGT
ACCTAAACGCGCTACAAAACTCTCAAGTACGCAACGCATCGCCAATACCT
TTTGGAACTTCATTAAATGAACAGACTTCCTGGCCTCCAAGATCTGTGCT
GCTACAGGGAGGCTCTCCCTCTCCGCTGCCAAACCACGTGCAAACCTTTA
ACAAATGTGCCAAGGGTTGGGGATCCATACCAGTCAAGCAACAGTCCTAT
TCAAGCCAATACAACTTACCTGGAAATCTACCGTACTCTGATTTTTAGAA
GCTTTCTAGACCAT
BS22673.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-RB | 2232 | CG1674-PB | 1..2232 | 17..2248 | 11160 | 100 | Plus |
| CG1674-RM | 2532 | CG1674-PM | 1514..2532 | 1230..2248 | 5095 | 100 | Plus |
| CG1674-RJ | 2085 | CG1674-PJ | 1067..2085 | 1230..2248 | 5095 | 100 | Plus |
| CG1674-RM | 2532 | CG1674-PM | 1..729 | 17..745 | 3405 | 97.8 | Plus |
| CG1674-RM | 2532 | CG1674-PM | 676..1132 | 773..1229 | 2285 | 100 | Plus |
| CG1674-RB | 2232 | CG1674-PB | 595..674 | 773..852 | 295 | 91.2 | Plus |
| CG1674-RB | 2232 | CG1674-PB | 757..836 | 611..690 | 295 | 91.2 | Plus |
| CG1674-RM | 2532 | CG1674-PM | 595..674 | 773..852 | 295 | 91.2 | Plus |
| CG1674-RM | 2532 | CG1674-PM | 676..755 | 611..690 | 295 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-RB | 2557 | CG1674-RB | 186..2417 | 17..2248 | 11160 | 100 | Plus |
| CG1674-RM | 2893 | CG1674-RM | 1735..2753 | 1230..2248 | 5095 | 100 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 1261..2279 | 1230..2248 | 5095 | 100 | Plus |
| CG1674-RM | 2893 | CG1674-RM | 222..950 | 17..745 | 3405 | 97.8 | Plus |
| CG1674-RM | 2893 | CG1674-RM | 897..1353 | 773..1229 | 2285 | 100 | Plus |
| CG1674-RB | 2557 | CG1674-RB | 780..859 | 773..852 | 295 | 91.2 | Plus |
| CG1674-RB | 2557 | CG1674-RB | 942..1021 | 611..690 | 295 | 91.2 | Plus |
| CG1674-RM | 2893 | CG1674-RM | 897..976 | 611..690 | 295 | 91.2 | Plus |
| CG1674-RM | 2893 | CG1674-RM | 816..895 | 773..852 | 295 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 245178..245763 | 1663..2248 | 2930 | 100 | Plus |
| 4 | 1348131 | 4 | 232277..232848 | 39..610 | 2860 | 100 | Plus |
| 4 | 1348131 | 4 | 243266..243586 | 1230..1550 | 1605 | 100 | Plus |
| 4 | 1348131 | 4 | 237269..237560 | 854..1145 | 1460 | 100 | Plus |
| 4 | 1348131 | 4 | 243634..243749 | 1550..1665 | 580 | 100 | Plus |
| 4 | 1348131 | 4 | 240314..240398 | 1145..1229 | 425 | 100 | Plus |
| 4 | 1348131 | 4 | 234863..234944 | 691..772 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 234265..234345 | 611..691 | 405 | 100 | Plus |
| 4 | 1348131 | 4 | 236395..236475 | 773..853 | 405 | 100 | Plus |
| 4 | 1348131 | 4 | 234265..234344 | 773..852 | 295 | 91.2 | Plus |
| 4 | 1348131 | 4 | 236395..236474 | 611..690 | 295 | 91.2 | Plus |
Blast to na_te.dros performed 2014-11-27 07:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 577..646 | 897..966 | 116 | 62.9 | Plus |
BS22673.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:59 Download gff for
BS22673.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RH | 218..894 | 17..693 | 100 | == | Plus |
| CG1674-RH | 895..1349 | 775..1229 | 100 | -> | Plus |
| CG1674-RH | 1854..2872 | 1230..2248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:10 Download gff for
BS22673.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RB | 186..2417 | 17..2248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:37 Download gff for
BS22673.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RB | 186..2417 | 17..2248 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:37 Download gff for
BS22673.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 231954..231977 | 17..40 | 100 | -> | Plus |
| 4 | 232279..232848 | 41..610 | 100 | -> | Plus |
| 4 | 234265..234345 | 611..691 | 100 | -> | Plus |
| 4 | 234864..234944 | 692..772 | 100 | -> | Plus |
| 4 | 236395..236475 | 773..853 | 100 | -> | Plus |
| 4 | 237269..237559 | 854..1144 | 100 | -> | Plus |
| 4 | 240314..240398 | 1145..1229 | 100 | -> | Plus |
| 4 | 243266..243585 | 1230..1549 | 100 | -> | Plus |
| 4 | 243634..243748 | 1550..1664 | 100 | -> | Plus |
| 4 | 245180..245763 | 1665..2248 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:10 Download gff for
BS22673.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 252580..252603 | 17..40 | 100 | -> | Plus |
| arm_4 | 252905..253474 | 41..610 | 100 | -> | Plus |
| arm_4 | 254891..254971 | 611..691 | 100 | -> | Plus |
| arm_4 | 255490..255570 | 692..772 | 100 | -> | Plus |
| arm_4 | 257021..257101 | 773..853 | 100 | -> | Plus |
| arm_4 | 257895..258185 | 854..1144 | 100 | -> | Plus |
| arm_4 | 260940..261024 | 1145..1229 | 100 | -> | Plus |
| arm_4 | 263892..264211 | 1230..1549 | 100 | -> | Plus |
| arm_4 | 264260..264374 | 1550..1664 | 100 | -> | Plus |
| arm_4 | 265806..266389 | 1665..2248 | 100 | | Plus |
BS22673.pep Sequence
Translation from 16 to 2247
> BS22673.pep
MDSTLNIEEKEIATKNETQIDYADEIKTTPQDNDNLNEKLLVSYIDSGFD
KPVTSRDNKDDDDLKIEESESEDCNSEKKNTTDLEVNPAALIDKPSLDIS
SSDMERTVEIEDSESNNPIIIDASIKTDPLISVENLSTVSENNFELDLID
GSTNGENSSNAENESPVQDTSNILIKGEDDKAIENCKSQDTTKSSSEKNV
NDPTSIASDLSAENTKADLVSLNEPKTYEPTTIAPDLKMENTKNSIPSPI
KPNVNDQTSSASDLTAENTKADHDSLNKPKDFNNQILNIISDIDINIKAQ
EKITQLKEQELKLIQKQNDLANEIHKQQILAKQLSAQNQLKQNECQSGEL
DLHSQYQNERGGPTSTLYQEKNIASKESANVSKTVDLRKIFTPATDAAEI
LPKNHFQQYQQRPVLSPNILPAYSDAGKHRVQLNIHQNQLIEKYSKPGLQ
VVQSPWKAALQTGSASSAFLEDTKSFSPPALTPIPSSQAGSKDWTDANEP
MPHGSSRRNTNAVASSPRSVIVPSNPQRDLAYTPCVAQGWGGRSVELPKG
LYVPKEISLSSYAAPSQQCEIHSKHFERPYEDTFPRTFPRNNYSANNNFP
GNDGIGEFPLSKPTGLTTGTLHQQPYSPTSYKKTVPGLEKVENFARYEQP
DRKRLTSGSPQYLNALQNSQVRNASPIPFGTSLNEQTSWPPRSVLLQGGS
PSPLPNHVQTFNKCAKGWGSIPVKQQSYSSQYNLPGNLPYSDF*
BS22673.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-PB | 743 | CG1674-PB | 1..743 | 1..743 | 3856 | 100 | Plus |
| CG1674-PM | 843 | CG1674-PM | 1..843 | 1..743 | 2862 | 70.9 | Plus |
| CG1674-PI | 589 | CG1674-PI | 4..589 | 221..743 | 2115 | 74.2 | Plus |
| CG1674-PH | 884 | CG1674-PH | 128..884 | 2..743 | 1859 | 54.4 | Plus |
| CG1674-PJ | 694 | CG1674-PJ | 1..694 | 1..743 | 1841 | 56.2 | Plus |
