BS22685.complete Sequence
2912 bp assembled on 2011-02-15
GenBank Submission: KX804590
> BS22685.complete
GAAGTTATCAGTCGACATGAGCGTAAGCCATAATTATGACCAAATGAGCC
AGCCAACAAACACAACAACAACGCAAACAAAAGCATCGAAAAGGCCAAGC
AGATTCAACAGCAAAATGCCGGTTGTCAACAGCAGATTAGCAGAGTTAGC
TCGGATAACAGTACTCTTAACAGCACTGCTTGTGAGCTACGCCAGTGGCT
TGCAAACTGTAGGCGAATCAGCAGATGATAATACCATCTGCCTGTATCGA
GAGTACAACACCACTTATCGAAAGGAGATTGGCGCAGTGTGGTTTGCCTC
AAAGGATCCATGTTTGGTGTATTCCTGTGCAGCTGGTGTGGCCAAGGATC
CACAGGCGCATATTGTGGCCACCCAAGTCGACTGCAATGAGTTCTACTGT
GAAGTGGGTTCCGAGCTGCGTAGTGTCGAAGGCAGTTGCTGCGGGGAGTG
TGTAAGGACTCACTGTCAACACAACCACACTCTGTATGCGGTGGGTGAAT
CATGGCACAATGATGCCGATTGCACGCTCATCGAATGTGGACGTCTGGAT
AATGGACAGATTGTAATGAATACATACAAGAGAAATTGTCCGGCTTTGAC
TGAAGATTGTCCAGCTTCAAGATTGGAGGAGCGAAACTGTTGTCCCTACT
GCAGGCCCCTCCAAACGGCCAGGATTGAGGAGCTGCAGGACAATGTAGCG
GAGAGCACGGATGATATTTGGACAGCCGAATGGTATCGAAACCATCCCTG
CAATCGGGATTGTCAAGTGGGAGCCGAACCCATGACCTGTCGCTACAAGT
TCGTGGTGGAATGGTACCAGACCTTTTCCAAAGCCTGCTACGATTGTCCA
CGGAATCTTACGGACTGCTCCCGACCACATTGTGTCATGGGCGATGGTTT
AGAGCGGAGTATCACTGTGGTCAATCGTATGATGCCCGGGCCAGCGATTG
AAGTCTGTGAGGGCGATGAAATAGTGGTCGATGTGAAGAATCATTTGTTG
GGCGAAAGCACATCGATTCACTGGCATGGTCTGCACCAGAAGAAGACACC
CTATATGGATGGTGTACCACACATCACTCAGTGTCCAATTACTCCACATG
CGACCTTCAGGTATTCCTTTCCAGCCGATCTCTCCGGCACTCACTTCTGG
CATTCGCACACTGGCATGCAGCGAGGTGATGGAGTTTTCGGTGCCTTAAT
CATCCGGAAACCAAAGACAGCCGAACCACACGGAGGACTCTACGACTTTG
ACCTCAGCGAGCATGTGATGATTGTCCAGGATTGGATACATGACACAGGT
GCCAGCATATTTTCCTATCATCATCACTCCCGAGGTGATAATAAGCCCCA
CAATCTGCTCGTGAACGGCAAGGGACGTTACTATAATCGCATTTGGGCGG
AAGCGAAGCAAGCTCATCGCAGAGCTGAGGAGAGAACTACCCAACCGGTG
GAACCATTGCCCAAGTCCCAGGTGGACTTCGTTCAGACACTACCGAGACA
AGCTCGATTGGCTAAAACTAATACAACCAAACTATTTCCCGTGAATTCCC
GCCAAAAGAGGGGTAATTTAAATGAGATACCCTTGGAACTAGTTCCCCAT
CAGATTTACACAGTGAGAAGAGGTTTTCGTTATCGCTTCAGAATTATAAA
TGCGGAATATCTAAACTGTCCTATTGTGGTGTCTATTGACGGTCATAACT
TGACAGCCATAAACTCGGATGGCTTTGATATTGAGGCAATGGACGTGGGC
TCTATAGTTACCTATTCCGGTGAGCGATTTGATTTTGTACTAAATGCCAA
TCTCGAGGTTGGAAACTATTGGATTCGACTAAAGGGTTTGATGGACTGCA
GCGAAGTCTTTACTTCCGCCTTTCAAGTGGCCATTCTTCGCTATGAGGGA
GCTCCAGATGAAGAGCCTACTGCGGAATTGAGTTACGGCCACAAGGCTGA
GGGCATTGAACTGAATGTGATGAACCGCGGTCCTGGTTACCCGGACACCA
AAACCGTTGCAGAAATGAGGGCTCTGCCCATCTATGATCATGTCTCGGGC
ATCGATCACGATACACTGAAACCGGAAGCGGACTACAAGTTCTTCATCTA
CTACGATTTCTATACTAAGAATAATCCCGATTTTCACGATAAAGATCTTT
ATGCCATGGACATGGAGATGACCCAGCAGAATCGCCTATACACGCCTCAA
CTGAATCATATAACCTTAAATTTTCCTTCGCTAGCACTGCTACCTTCCAG
GAGTCAGCTAAAGGACTCGGACTTCTGTAACGAAACGAGCTTAATGGATC
AGGGTATCGATTGTCGCCAGGAGTTCTGCAAGTGTCATCATGTCCTGCAG
GTTCCATTGGGCGCCGTGGTCGAGATGATCATCGTGGACGAGGGATTCCA
ATACTATGCCAATCATCCCTTTCATTTGCATGGAAACGCCTTCAGAGTCA
TGGGATTGGAGCGTTTGGGCGAAAATGTCACCGTTGAAATGATAAAACAA
CTGGATCAGTTCAATCTACTCAAGCGGAATCTGGACAATCCACCCGTGAA
GGACACAGTTACTATTCCAGATGGAGGCTATACCATCATCAGATTCGAGG
CCTCTAATCCGGGCTATTGGCTTTTCCATTGCCACATCGAATTCCATGCC
GAGATCGGTATGGCTCTGGTCTTCAAAGTGGGTAACGACGATCAAATGGT
TCCGGTGCCAGAGAACTTTCCCACCTGCGGCGATTATAATCCAGACTTAA
GATCTGATGGAGGAACTACAGAAGATTCGGGATCCAGCAAGCCGATAACA
GCTACTCCCCCAAATACAGGAGGCGGTGGATCGGGTCTGGAACCCACTTG
GATTACATTGATGATTAGTTCCATGCTAGTGAAACTCTATCGATAAAAGC
TTTCTAGACCAT
BS22685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mco1-RC | 2880 | CG3759-PC | 1..2880 | 17..2896 | 14400 | 100 | Plus |
| Mco1-RB | 2880 | CG3759-PB | 1..2880 | 17..2896 | 14400 | 100 | Plus |
| Mco1-RA | 2880 | CG3759-PA | 1..2880 | 17..2896 | 14400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mco1-RC | 3325 | CG3759-RC | 204..3088 | 17..2901 | 14410 | 100 | Plus |
| Mco1-RB | 3337 | CG3759-RB | 216..3100 | 17..2901 | 14410 | 100 | Plus |
| Mco1-RA | 3305 | CG3759-RA | 184..3068 | 17..2901 | 14410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9423544..9425629 | 406..2491 | 10430 | 100 | Plus |
| 2L | 23513712 | 2L | 9425695..9426105 | 2491..2901 | 2040 | 99.8 | Plus |
| 2L | 23513712 | 2L | 9420671..9420882 | 17..228 | 1045 | 99.5 | Plus |
| 2L | 23513712 | 2L | 9423291..9423475 | 223..407 | 925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:01:22 has no hits.
BS22685.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:59 Download gff for
BS22685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3759-RC | 199..3076 | 17..2894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:39 Download gff for
BS22685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mco1-RA | 184..3061 | 17..2894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:00 Download gff for
BS22685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mco1-RA | 184..3061 | 17..2894 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:00 Download gff for
BS22685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9420671..9420878 | 17..224 | 100 | -> | Plus |
| 2L | 9423293..9423474 | 225..406 | 100 | -> | Plus |
| 2L | 9423545..9425629 | 407..2491 | 100 | -> | Plus |
| 2L | 9425696..9426098 | 2492..2894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:39 Download gff for
BS22685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9420671..9420878 | 17..224 | 100 | -> | Plus |
| arm_2L | 9423293..9423474 | 225..406 | 100 | -> | Plus |
| arm_2L | 9423545..9425629 | 407..2491 | 100 | -> | Plus |
| arm_2L | 9425696..9426098 | 2492..2894 | 100 | | Plus |
BS22685.pep Sequence
Translation from 16 to 2895
> BS22685.pep
MSVSHNYDQMSQPTNTTTTQTKASKRPSRFNSKMPVVNSRLAELARITVL
LTALLVSYASGLQTVGESADDNTICLYREYNTTYRKEIGAVWFASKDPCL
VYSCAAGVAKDPQAHIVATQVDCNEFYCEVGSELRSVEGSCCGECVRTHC
QHNHTLYAVGESWHNDADCTLIECGRLDNGQIVMNTYKRNCPALTEDCPA
SRLEERNCCPYCRPLQTARIEELQDNVAESTDDIWTAEWYRNHPCNRDCQ
VGAEPMTCRYKFVVEWYQTFSKACYDCPRNLTDCSRPHCVMGDGLERSIT
VVNRMMPGPAIEVCEGDEIVVDVKNHLLGESTSIHWHGLHQKKTPYMDGV
PHITQCPITPHATFRYSFPADLSGTHFWHSHTGMQRGDGVFGALIIRKPK
TAEPHGGLYDFDLSEHVMIVQDWIHDTGASIFSYHHHSRGDNKPHNLLVN
GKGRYYNRIWAEAKQAHRRAEERTTQPVEPLPKSQVDFVQTLPRQARLAK
TNTTKLFPVNSRQKRGNLNEIPLELVPHQIYTVRRGFRYRFRIINAEYLN
CPIVVSIDGHNLTAINSDGFDIEAMDVGSIVTYSGERFDFVLNANLEVGN
YWIRLKGLMDCSEVFTSAFQVAILRYEGAPDEEPTAELSYGHKAEGIELN
VMNRGPGYPDTKTVAEMRALPIYDHVSGIDHDTLKPEADYKFFIYYDFYT
KNNPDFHDKDLYAMDMEMTQQNRLYTPQLNHITLNFPSLALLPSRSQLKD
SDFCNETSLMDQGIDCRQEFCKCHHVLQVPLGAVVEMIIVDEGFQYYANH
PFHLHGNAFRVMGLERLGENVTVEMIKQLDQFNLLKRNLDNPPVKDTVTI
PDGGYTIIRFEASNPGYWLFHCHIEFHAEIGMALVFKVGNDDQMVPVPEN
FPTCGDYNPDLRSDGGTTEDSGSSKPITATPPNTGGGGSGLEPTWITLMI
SSMLVKLYR*
BS22685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mco1-PC | 959 | CG3759-PC | 1..959 | 1..959 | 5232 | 100 | Plus |
| Mco1-PB | 959 | CG3759-PB | 1..959 | 1..959 | 5232 | 100 | Plus |
| Mco1-PA | 959 | CG3759-PA | 1..959 | 1..959 | 5232 | 100 | Plus |
| laccase2-PD | 784 | CG42345-PD | 162..779 | 217..909 | 1136 | 36.1 | Plus |
| laccase2-PE | 784 | CG32838-PA | 162..783 | 217..913 | 1130 | 34.8 | Plus |
