Clone BS22707 Report

Search the DGRC for BS22707

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:227
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG12012-RA
Protein status:BS22707.pep: full length peptide match
Sequenced Size:401

Clone Sequence Records

BS22707.complete Sequence

401 bp assembled on 2011-01-25

GenBank Submission: KX804993

> BS22707.complete
GAAGTTATCAGTCGACATGGCAGATACCCGTAAAGACGCCGCGCCGCCGA
GCTACGAAGAAGTCATGAACAGTCCCTCGCAGGATTCCCGGCTGATAGTG
GGCGTGCATCAGGGAGCACCTAGTGCTCCGCCACCAAACATGCACATGCC
AACCTACGGAGCTTTCGAGACGACGCCGGTCAGCGTGGTGATTCAGCCTG
CTCCGGTCGCTATGCCCACCGAGATCATCGTGATTGGAGGATGCCCTGCA
TGTCGGATTGGATACCTGGAGGACACCTTCTCCGCCTGCGGACTGTGCTG
CGCAATCTTCTTCTTCCCGCTGGGAATTCTCTGTTGCTTGGCCATGCGTG
AGAAGCGCTGTTCCAACTGCGGAACGGTTTTCTAGAAGCTTTCTAGACCA
T

BS22707.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12012-RC 369 CG12012-PC 1..369 17..385 1845 100 Plus
CG12012-RA 369 CG12012-PA 1..369 17..385 1845 100 Plus
CG12012-RB 246 CG12012-PB 1..246 140..385 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12012-RC 1185 CG12012-RC 125..494 17..386 1850 100 Plus
CG12012-RA 880 CG12012-RA 125..494 17..386 1850 100 Plus
CG12012-RB 931 CG12012-RB 242..545 83..386 1520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3376998..3377301 83..386 1520 100 Plus
3L 28110227 3L 3376881..3376947 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:35:35 has no hits.

BS22707.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:20 Download gff for BS22707.complete
Subject Subject Range Query Range Percent Splice Strand
CG12012-RA 125..493 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:41 Download gff for BS22707.complete
Subject Subject Range Query Range Percent Splice Strand
CG12012-RA 125..493 17..385 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:03 Download gff for BS22707.complete
Subject Subject Range Query Range Percent Splice Strand
CG12012-RA 125..493 17..385 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:03 Download gff for BS22707.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3376881..3376947 17..83 100 -> Plus
3L 3376999..3377300 84..385 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:41 Download gff for BS22707.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3376881..3376947 17..83 100 -> Plus
arm_3L 3376999..3377300 84..385 100   Plus

BS22707.pep Sequence

Translation from 16 to 384

> BS22707.pep
MADTRKDAAPPSYEEVMNSPSQDSRLIVGVHQGAPSAPPPNMHMPTYGAF
ETTPVSVVIQPAPVAMPTEIIVIGGCPACRIGYLEDTFSACGLCCAIFFF
PLGILCCLAMREKRCSNCGTVF*

BS22707.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12012-PC 122 CG12012-PC 1..122 1..122 665 100 Plus
CG12012-PA 122 CG12012-PA 1..122 1..122 665 100 Plus
CG12012-PB 81 CG12012-PB 1..81 42..122 449 100 Plus