Clone BS22708 Report

Search the DGRC for BS22708

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:227
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptTrissin-RB
Protein status:BS22708.pep: full length peptide match
Sequenced Size:359

Clone Sequence Records

BS22708.complete Sequence

359 bp assembled on 2011-01-25

GenBank Submission: KX803780

> BS22708.complete
GAAGTTATCAGTCGACATGACTAAGACAACGATGCATTGGCTGGCTCACT
TCCAGATCATCTTGCTATGCATTTGGTTGATGTGCCCCCCCAGTTCGCAG
GCCATAAAATGCGACACTTGTGGCAAGGAGTGTGCCAGCGCATGTGGCAC
AAAGCACTTTCGCACATGCTGCTTTAACTACCTTCGCAAGCGATCCGACC
CCGATGCACTGCGTCAGAGCTCGAACAGGAGGCTCATCGACTTCATACTG
CTGCAGGGGCGTGCCCTCTTCACCCAGGAGTTGCGAGAAAGGCGCCACAA
TGGCACATTGATGGACCTCGGCCTGAACACCTACTACCCCTAAAAGCTTT
CTAGACCAT

BS22708.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Trissin-RB 327 CG14871-PB 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Trissin-RB 551 CG14871-RB 61..387 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15484894..15485075 343..162 910 100 Minus
3R 32079331 3R 15485129..15485222 162..69 470 100 Minus
3R 32079331 3R 15485284..15485336 69..17 265 100 Minus
Blast to na_te.dros performed 2014-11-26 16:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 726..757 257..226 106 81.2 Minus

BS22708.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:21 Download gff for BS22708.complete
Subject Subject Range Query Range Percent Splice Strand
CG14871-RB 61..385 17..341 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:43 Download gff for BS22708.complete
Subject Subject Range Query Range Percent Splice Strand
Trissin-RB 61..385 17..341 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:05 Download gff for BS22708.complete
Subject Subject Range Query Range Percent Splice Strand
Trissin-RB 61..385 17..341 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:05 Download gff for BS22708.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15484896..15485074 163..341 100 <- Minus
3R 15485129..15485222 69..162 100 <- Minus
3R 15485285..15485336 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:43 Download gff for BS22708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11310618..11310796 163..341 100 <- Minus
arm_3R 11310851..11310944 69..162 100 <- Minus
arm_3R 11311007..11311058 17..68 100   Minus

BS22708.pep Sequence

Translation from 16 to 342

> BS22708.pep
MTKTTMHWLAHFQIILLCIWLMCPPSSQAIKCDTCGKECASACGTKHFRT
CCFNYLRKRSDPDALRQSSNRRLIDFILLQGRALFTQELRERRHNGTLMD
LGLNTYYP*

BS22708.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Trissin-PB 108 CG14871-PB 1..108 1..108 597 100 Plus