BS22716.complete Sequence
2435 bp assembled on 2011-02-18
GenBank Submission: KX801631
> BS22716.complete
GAAGTTATCAGTCGACATGCCGGGCGTGGTCTTCCTAATCGTTGTGCCTA
CGGCGAATTTTGAACGTGAGCTGATTTACGGCACCTCAAATAATGCCCTG
CTGGAGACGTCGTCTGCCGTTGGCATTGGCAGCCATCCGGGACACCTCAC
TGGTGGCCATGGTGGCCATACTGCGGTCACTGCAGCCGCCAATGGTGGTG
GCAACAATAATCTGAACATCAATCTTCCGGAGAATAACAACGCAATACTA
CGACTCGAAGTTGAATTACGTGACAAGAATGTGCCCAAGTATCGTCGTGG
CGGAGGCGGTGGGCGTGGCGGTGGCCCAGGCATCGGACAAGTGGGCGGCG
GACAAGTAGGCAAGCGAACCGCAGGAGGCGCAGGTGGTGCAGGAGGAACG
GGCACCGGAGTCCAGATTTTGCCAGCTGACACCTCAACGGTGGTGGGTGC
TCCCATGGACAAACGTAATTTAGTGGTGCCGCTCGAAAAGGTACTGGAGG
AGCTGCTTGTCAAGCTGGAAATTGAGCACGTTACTTGGACGACCAGCAAG
AAGGGATATTTCCATCACGTCGTTTTTCCGCTGCAGGCGGGATCCCCCTG
CGAGACGACGCTGCACTGCCTCACGGAACTGGGCATTGGCACTAAATTGA
ATTCCAGTGTCAGTGTGCTGCCGTGCAGCGTTAGTTATGATGCCATCACA
GATGCGGCCAACATGCGAGATGACTACAGCGAGGAAGCCGAGGATGCCTC
GAAATGGAACAATTTTGTGGAATCAATTAAGTCGAAATTAACAGTCAAAC
AGGTGGTGGATGGAGTTCGAGCCGGAGGATCCTTGTCCTTTGACTACTTG
CTGCTAATCGTTACAGCCGACTCTTTGGCCGCCCTGGGCCTCGTGGAGAA
TAATGCCCCCAATATAGTGGCTGCCATGTTAGTTTCGCCGCTTATGGGTC
CCGTAATGTCGATAACATTCGGCGCAATTATCTCCGACAAAGAACTAATG
AGAGTTGGCTTCCTTTGCCTCGGATTGGGCATGTTTATCTCGCTGCTATT
TGGCTTCATCTTCGGCCTAATCCTGGGCACCACCGAAATGCCTTGGGGCC
AGAACTCCGACTGGCCCACGGAGGAGATGCGCGGCAGGGGCAATGTGCGC
GCCCTTTGGATGGGCGTTTTGTGGGCGTTAACATCTGGCACTGGCGTGGC
AGTGGCCTTGCTCCAGGGTTCCGCCGGTCCGCTGATCGGGGTCGCCATAT
CCGCCTCCCTGCTCCCGCCCGTCGTCAATTGCGGTCTCTTCTGGTCACTG
GCCTGCATTTGGCTCATCTATCCGGAGAAGCGGATTCCGCACTTGAAGAA
CGAGGCGATGAACGCGACTAGTGCATACCCCTTCCTCTACACCAACTATC
TGCCCACCGAGTTCCTGATCAACGGCATCGTGTCCGCCTGCCTGACCATC
GTGAATGTCATTTGCATATTTATCACGGCCATAATCGTATTGAAAATTAA
AGAGGTCTCGGCGCCATATACGGCCAGTCCGGATTTAAAGCGATTTTGGG
AAACAGATCTTCGCACCGTACGCAAAACGAATCGCTCAACAATGCGGCAT
CCTCGCAGCCGCAGCTCGATGGCCGGAGGTCCTGGAGGACATGGAGGGAT
GGGTACCGTCAGGGGCATGGACAAGTTCAGCGGTGGCGCCCTCTATCACG
GCCTGGACGAGCGTGATGCCCAGATGGACAATGCGCTGGAAAGGGCTCTG
GCCCAGGCGGAGAACGATGCCACATTCAGGAAGGTCAAGCGGATGAGCTA
CTCCAGCAATGCGGCTGGCGAGCTAACCGAGCGACTGGCAAAGATAGCCG
GCCTAAACCGCCTAAAGACAGATGGTGATCCAGGACAAACGGGATCGGGC
AGTCTGTCTGGCAGTCGAATGAACTCCATTCCGAACTCCCAGTTGAATGT
GGATCTGAAGGCGCTGGACAAGCTGGTAAGCACTCTTCTGGAGCAGCACA
CTTCGGGTGCCAAGGGAGCCACCTCCTTTAAGCCCGAAACGGGCACACGC
ACTCCGCCGCTGCAGCGAATGGCCTCCAAGAAGCTGAACCGTTGGCGTCC
ACTCTCCCGATCTGCCCACAGCTACAAGCGTCACGAGAGCAGTGATCTCA
TCGGTGGTAGCTTCACCCAGCTGATGGAGCGCGTTGATCCGCCGGCGACT
TCCGCCCAGCATCCACCCAACATGCCAACGATCATGGAGAGCAGTGCCGG
CAGTCCAACTCCGAACAATGCCCAGCAACAGGCGGGTCATCCGCCCATGT
GGAATGCATCCTTGGACGCGACGCCAGGTGCGGTGAGAAATGTGCTGCAC
GGAGCAGCTAGTGGAGCCAGAAATGAGGCCGAGGATCAGCTCAATTTGAC
GCAAAACTATGTGGACTGAAAGCTTTCTAGACCAT
BS22716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34109-RC | 2403 | CG34109-PC | 1..2403 | 17..2419 | 12015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34109-RC | 2551 | CG34109-RC | 44..2446 | 17..2419 | 12015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10125033..10125631 | 1821..2419 | 2995 | 100 | Plus |
| 2L | 23513712 | 2L | 10103645..10104058 | 80..493 | 2070 | 100 | Plus |
| 2L | 23513712 | 2L | 10117939..10118198 | 1283..1542 | 1300 | 100 | Plus |
| 2L | 23513712 | 2L | 10104790..10104964 | 489..663 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 10114747..10114896 | 1134..1283 | 750 | 100 | Plus |
| 2L | 23513712 | 2L | 10107343..10107487 | 726..870 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 10120719..10120860 | 1542..1683 | 710 | 100 | Plus |
| 2L | 23513712 | 2L | 10121899..10122038 | 1683..1822 | 700 | 100 | Plus |
| 2L | 23513712 | 2L | 10110935..10111073 | 1000..1138 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 10107756..10107885 | 871..1000 | 650 | 100 | Plus |
| 2L | 23513712 | 2L | 10106161..10106229 | 661..729 | 345 | 100 | Plus |
| 2L | 23513712 | 2L | 10101188..10101252 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:30:06 has no hits.
BS22716.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:48 Download gff for
BS22716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34109-RC | 44..2445 | 17..2418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:53 Download gff for
BS22716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34109-RC | 44..2445 | 17..2418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:22 Download gff for
BS22716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34109-RC | 44..2445 | 17..2418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:22 Download gff for
BS22716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10121900..10122038 | 1684..1822 | 100 | -> | Plus |
| 2L | 10104792..10104964 | 491..663 | 100 | -> | Plus |
| 2L | 10106164..10106229 | 664..729 | 100 | -> | Plus |
| 2L | 10107347..10107487 | 730..870 | 100 | -> | Plus |
| 2L | 10107756..10107885 | 871..1000 | 100 | -> | Plus |
| 2L | 10110936..10111072 | 1001..1137 | 100 | -> | Plus |
| 2L | 10117939..10118198 | 1283..1542 | 100 | -> | Plus |
| 2L | 10114751..10114895 | 1138..1282 | 100 | -> | Plus |
| 2L | 10120720..10120860 | 1543..1683 | 100 | -> | Plus |
| 2L | 10101188..10101251 | 17..80 | 100 | -> | Plus |
| 2L | 10103646..10104055 | 81..490 | 100 | -> | Plus |
| 2L | 10125035..10125630 | 1823..2418 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:53 Download gff for
BS22716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10120720..10120860 | 1543..1683 | 100 | -> | Plus |
| arm_2L | 10121900..10122038 | 1684..1822 | 100 | -> | Plus |
| arm_2L | 10101188..10101251 | 17..80 | 100 | -> | Plus |
| arm_2L | 10103646..10104055 | 81..490 | 100 | -> | Plus |
| arm_2L | 10104792..10104964 | 491..663 | 100 | -> | Plus |
| arm_2L | 10106164..10106229 | 664..729 | 100 | -> | Plus |
| arm_2L | 10107347..10107487 | 730..870 | 100 | -> | Plus |
| arm_2L | 10107756..10107885 | 871..1000 | 100 | -> | Plus |
| arm_2L | 10110936..10111072 | 1001..1137 | 100 | -> | Plus |
| arm_2L | 10114751..10114895 | 1138..1282 | 100 | -> | Plus |
| arm_2L | 10117939..10118198 | 1283..1542 | 100 | -> | Plus |
| arm_2L | 10125035..10125630 | 1823..2418 | 100 | | Plus |
BS22716.pep Sequence
Translation from 16 to 2418
> BS22716.pep
MPGVVFLIVVPTANFERELIYGTSNNALLETSSAVGIGSHPGHLTGGHGG
HTAVTAAANGGGNNNLNINLPENNNAILRLEVELRDKNVPKYRRGGGGGR
GGGPGIGQVGGGQVGKRTAGGAGGAGGTGTGVQILPADTSTVVGAPMDKR
NLVVPLEKVLEELLVKLEIEHVTWTTSKKGYFHHVVFPLQAGSPCETTLH
CLTELGIGTKLNSSVSVLPCSVSYDAITDAANMRDDYSEEAEDASKWNNF
VESIKSKLTVKQVVDGVRAGGSLSFDYLLLIVTADSLAALGLVENNAPNI
VAAMLVSPLMGPVMSITFGAIISDKELMRVGFLCLGLGMFISLLFGFIFG
LILGTTEMPWGQNSDWPTEEMRGRGNVRALWMGVLWALTSGTGVAVALLQ
GSAGPLIGVAISASLLPPVVNCGLFWSLACIWLIYPEKRIPHLKNEAMNA
TSAYPFLYTNYLPTEFLINGIVSACLTIVNVICIFITAIIVLKIKEVSAP
YTASPDLKRFWETDLRTVRKTNRSTMRHPRSRSSMAGGPGGHGGMGTVRG
MDKFSGGALYHGLDERDAQMDNALERALAQAENDATFRKVKRMSYSSNAA
GELTERLAKIAGLNRLKTDGDPGQTGSGSLSGSRMNSIPNSQLNVDLKAL
DKLVSTLLEQHTSGAKGATSFKPETGTRTPPLQRMASKKLNRWRPLSRSA
HSYKRHESSDLIGGSFTQLMERVDPPATSAQHPPNMPTIMESSAGSPTPN
NAQQQAGHPPMWNASLDATPGAVRNVLHGAASGARNEAEDQLNLTQNYVD
*
BS22716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34109-PC | 800 | CG34109-PC | 1..800 | 1..800 | 4146 | 100 | Plus |
| CG7384-PA | 605 | CG7384-PA | 92..450 | 157..519 | 608 | 36 | Plus |
| CG12446-PA | 709 | CG12446-PA | 102..470 | 156..520 | 508 | 34.6 | Plus |
