Clone BS22718 Report

Search the DGRC for BS22718

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:227
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG13891-RA
Protein status:BS22718.pep: full length peptide match
Sequenced Size:509

Clone Sequence Records

BS22718.complete Sequence

509 bp assembled on 2011-01-25

GenBank Submission: KX804847

> BS22718.complete
GAAGTTATCAGTCGACATGGCGGCTCTGGTGGACGAAAGCAACTACGCCT
ATGTGAAGCAGGTGGCTCTGGACTGGCGGGAGCTGGTGCGCGAGAAGCGC
AAGAGCAATATCTTTTCGCCCACGATAAGCATGCAGGCGGTTGATTCCCA
ACAGCCGATAGGGGACACAAGGTCGCGGACACAGTCGATGATTCCGGCCG
AGAGACGCGAGTCCAGCTTCTACCGGCACCGCTTCTCGCAGCAGGCCAAG
CCCGTGGAGATCGAGTGCCAGGAGGTCGGATCAATGGAGCCAGACCGCAT
TCGGGTTAGCGGAGACATTCTGCTCTACATCTACCAACCGATTTTTGTGT
CAAACACAGTGATGGCCTCCATTCAAGCCTGGTCGCCCAGTGAAATAAGC
ATAACGTCGTCCAAACTGAAGGAGCCTATTAGAGAAGAGAACCCCACGGC
TAAGGTGGAATCCGATCCATCACCCGAGCCCATGTCGCCGTAAAAGCTTT
CTAGACCAT

BS22718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13891-RA 477 CG13891-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13891-RA 761 CG13891-RA 196..677 12..493 2395 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 433230..433711 493..12 2395 99.8 Minus
Blast to na_te.dros performed on 2014-11-26 16:33:51 has no hits.

BS22718.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:06 Download gff for BS22718.complete
Subject Subject Range Query Range Percent Splice Strand
CG13891-RA 201..675 17..491 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:04 Download gff for BS22718.complete
Subject Subject Range Query Range Percent Splice Strand
CG13891-RA 201..675 17..491 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:20 Download gff for BS22718.complete
Subject Subject Range Query Range Percent Splice Strand
CG13891-RA 201..675 17..491 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:20 Download gff for BS22718.complete
Subject Subject Range Query Range Percent Splice Strand
3L 433232..433706 17..491 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:04 Download gff for BS22718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 433232..433706 17..491 100   Minus

BS22718.pep Sequence

Translation from 16 to 492

> BS22718.pep
MAALVDESNYAYVKQVALDWRELVREKRKSNIFSPTISMQAVDSQQPIGD
TRSRTQSMIPAERRESSFYRHRFSQQAKPVEIECQEVGSMEPDRIRVSGD
ILLYIYQPIFVSNTVMASIQAWSPSEISITSSKLKEPIREENPTAKVESD
PSPEPMSP*

BS22718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13891-PA 158 CG13891-PA 1..158 1..158 801 100 Plus