BS22728.complete Sequence
611 bp assembled on 2011-01-25
GenBank Submission: KX801165
> BS22728.complete
GAAGTTATCAGTCGACATGCTGTTCGTATTTGGCTTTGCTAGTTCCTGGG
CCGCAGACTACGAGCTGTTGCTGGAGGACCCTGATATCTTTTCACCCTGC
ACTGAACCGCCGCCGGGATCGATTGGATTCCACGATGCCTTCGATATTGG
CGATCTGGTAGTCGACCAGGACATGGACATCATTCACCTGTCCGAGAGTG
TCACCTCAATCTGGGATGTGGAGCCCACAGATCGCATATCCGCCAGGTTT
GCAATAATGCATTACAACCGCGGCAGCTGGGAACCGACTGTATTTAGCAT
GGCCACGCCGGACTTCTGCGCCTCAATGTTTGATGAGAATCAGTCGTGGT
TTAAGTACTGGACCAAACACATTTCGAACCGCGATGAGGTGATGGAGAAG
TGTTTTAAAACGCGTGGTACCGTTATAATGCACAATCCATTCGATCTGCA
GCTGCGTCTAACGGACATTCGTGGTGCAACTCTCAGGGGTCGTTACAAAG
CTGTGGTCACCTTTGAGGCGGTCGATGAGAAGGATGTGCCACGCCGTAAT
TCCATTTGCTTCGAAATCAGGGGAGAGGCCGAGAAGATAAATTAAAAGCT
TTCTAGACCAT
BS22728.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42c-RB | 591 | CG33350-PB | 12..591 | 16..595 | 2900 | 100 | Plus |
CheB38c-RA | 597 | CG14405-PA | 265..360 | 266..361 | 180 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42c-RB | 1649 | CG33350-RB | 990..1569 | 16..595 | 2900 | 100 | Plus |
CheB38c-RA | 659 | CG14405-RA | 265..360 | 266..361 | 180 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6945173..6945399 | 242..16 | 1135 | 100 | Minus |
2R | 25286936 | 2R | 6944694..6944870 | 595..419 | 885 | 100 | Minus |
2R | 25286936 | 2R | 6944941..6945117 | 418..242 | 885 | 100 | Minus |
2L | 23513712 | 2L | 20820449..20820544 | 361..266 | 180 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:35:47 has no hits.
BS22728.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:34 Download gff for
BS22728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42c-RA | 10..586 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:07 Download gff for
BS22728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42c-RB | 991..1567 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:25 Download gff for
BS22728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42c-RB | 991..1567 | 17..593 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:25 Download gff for
BS22728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6944696..6944870 | 419..593 | 100 | <- | Minus |
2R | 6944941..6945117 | 242..418 | 100 | <- | Minus |
2R | 6945174..6945398 | 17..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:07 Download gff for
BS22728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2832201..2832375 | 419..593 | 100 | <- | Minus |
arm_2R | 2832446..2832622 | 242..418 | 100 | <- | Minus |
arm_2R | 2832679..2832903 | 17..241 | 100 | | Minus |
BS22728.pep Sequence
Translation from 16 to 594
> BS22728.pep
MLFVFGFASSWAADYELLLEDPDIFSPCTEPPPGSIGFHDAFDIGDLVVD
QDMDIIHLSESVTSIWDVEPTDRISARFAIMHYNRGSWEPTVFSMATPDF
CASMFDENQSWFKYWTKHISNRDEVMEKCFKTRGTVIMHNPFDLQLRLTD
IRGATLRGRYKAVVTFEAVDEKDVPRRNSICFEIRGEAEKIN*
BS22728.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42c-PB | 196 | CG33350-PB | 5..196 | 1..192 | 1035 | 100 | Plus |
CheB42b-PA | 196 | CG33351-PA | 5..195 | 1..191 | 632 | 57.1 | Plus |
CheB38c-PA | 198 | CG14405-PA | 6..196 | 1..191 | 578 | 50.8 | Plus |
CheB38a-PA | 197 | CG33320-PA | 13..196 | 8..191 | 520 | 47.8 | Plus |
CheB38b-PA | 197 | CG33321-PA | 6..196 | 1..191 | 502 | 44.5 | Plus |