Clone BS22728 Report

Search the DGRC for BS22728

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:227
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCheB42c-RA
Protein status:BS22728.pep: full length peptide match
Sequenced Size:611

Clone Sequence Records

BS22728.complete Sequence

611 bp assembled on 2011-01-25

GenBank Submission: KX801165

> BS22728.complete
GAAGTTATCAGTCGACATGCTGTTCGTATTTGGCTTTGCTAGTTCCTGGG
CCGCAGACTACGAGCTGTTGCTGGAGGACCCTGATATCTTTTCACCCTGC
ACTGAACCGCCGCCGGGATCGATTGGATTCCACGATGCCTTCGATATTGG
CGATCTGGTAGTCGACCAGGACATGGACATCATTCACCTGTCCGAGAGTG
TCACCTCAATCTGGGATGTGGAGCCCACAGATCGCATATCCGCCAGGTTT
GCAATAATGCATTACAACCGCGGCAGCTGGGAACCGACTGTATTTAGCAT
GGCCACGCCGGACTTCTGCGCCTCAATGTTTGATGAGAATCAGTCGTGGT
TTAAGTACTGGACCAAACACATTTCGAACCGCGATGAGGTGATGGAGAAG
TGTTTTAAAACGCGTGGTACCGTTATAATGCACAATCCATTCGATCTGCA
GCTGCGTCTAACGGACATTCGTGGTGCAACTCTCAGGGGTCGTTACAAAG
CTGTGGTCACCTTTGAGGCGGTCGATGAGAAGGATGTGCCACGCCGTAAT
TCCATTTGCTTCGAAATCAGGGGAGAGGCCGAGAAGATAAATTAAAAGCT
TTCTAGACCAT

BS22728.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42c-RB 591 CG33350-PB 12..591 16..595 2900 100 Plus
CheB38c-RA 597 CG14405-PA 265..360 266..361 180 79.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42c-RB 1649 CG33350-RB 990..1569 16..595 2900 100 Plus
CheB38c-RA 659 CG14405-RA 265..360 266..361 180 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6945173..6945399 242..16 1135 100 Minus
2R 25286936 2R 6944694..6944870 595..419 885 100 Minus
2R 25286936 2R 6944941..6945117 418..242 885 100 Minus
2L 23513712 2L 20820449..20820544 361..266 180 79.2 Minus
Blast to na_te.dros performed on 2014-11-26 15:35:47 has no hits.

BS22728.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:34 Download gff for BS22728.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42c-RA 10..586 17..593 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:07 Download gff for BS22728.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42c-RB 991..1567 17..593 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:25 Download gff for BS22728.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42c-RB 991..1567 17..593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:25 Download gff for BS22728.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6944696..6944870 419..593 100 <- Minus
2R 6944941..6945117 242..418 100 <- Minus
2R 6945174..6945398 17..241 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:07 Download gff for BS22728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2832201..2832375 419..593 100 <- Minus
arm_2R 2832446..2832622 242..418 100 <- Minus
arm_2R 2832679..2832903 17..241 100   Minus

BS22728.pep Sequence

Translation from 16 to 594

> BS22728.pep
MLFVFGFASSWAADYELLLEDPDIFSPCTEPPPGSIGFHDAFDIGDLVVD
QDMDIIHLSESVTSIWDVEPTDRISARFAIMHYNRGSWEPTVFSMATPDF
CASMFDENQSWFKYWTKHISNRDEVMEKCFKTRGTVIMHNPFDLQLRLTD
IRGATLRGRYKAVVTFEAVDEKDVPRRNSICFEIRGEAEKIN*

BS22728.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42c-PB 196 CG33350-PB 5..196 1..192 1035 100 Plus
CheB42b-PA 196 CG33351-PA 5..195 1..191 632 57.1 Plus
CheB38c-PA 198 CG14405-PA 6..196 1..191 578 50.8 Plus
CheB38a-PA 197 CG33320-PA 13..196 8..191 520 47.8 Plus
CheB38b-PA 197 CG33321-PA 6..196 1..191 502 44.5 Plus