BS22729.complete Sequence
1151 bp assembled on 2011-01-25
GenBank Submission: KX801413
> BS22729.complete
GAAGTTATCAGTCGACATGCCAAAGCCCTCTAAACAGGACTCTATCTCGT
TAAAATCCAGTAACTCAGTTTTTTTGGAAGATGACCAATTCGAAAATCTA
GAGGAAGAGTTTCTGCATAATGAATGCATTAGTTTACCCTCCGACTTAAC
GAGAGTACAAAGTGTTATTTTGGACTACAAGCAGTTCAAAGCGGCTCGCA
CAATTCAGCGTTATATTCACGGATGGCTAGTTCGAGAAAATTTCCGAAAA
CTTCAGAAGTCTGCGATTATTATTCAAAAATGGTGGCGCCGTTTTGAGGC
TCAGAAAAATTTGCTTTATGTGGCCGAAAGCGCTTTGCAGTCGGCTGTTT
TGGCCCATTACGACAAGTCTGCTACCCTGATTCAGACGCTCTATCGCGGA
TGGTGGTCGCGAAAACATATCTTTGACCTAACCATGCTCAAGAGCGTGCA
GATAATGTTGGCAAAGGACCTGATTCACTCTTTGGTCAATTACTTGCACG
CAACGAAAAATTCTGAAATGCTTCCAGGCATTTACACGATACGGGACTCG
AGCATATGTCTGGAAACATTGGAGGAACTGATGGCAACATTTGGCTTTCG
ATTCTATAACGCTAATGCTTGCTACAAAATGAAGGAAACGTTGTCAATGG
TGGCACAGAGCCGAAAGACGTTTACGGCCACATCCTATTTCACGGATGTA
CCATATCCCGGGTTTAATGATCGAGGATTTTGTGGCCCTCGGCAGAATTC
TGCCATGACCTTGAATGCCAAAGATCCAGAACATTATGAATTGATTCACA
TATTCCTGTCCGGTAGTAGAAAAATTGGCATGACAACGGCTAAGCTCGAA
CAGAAAATAGCCAACATTGCAGAAGAAAATCGCTTAAATATGTTTATAAA
GAGGGACAACAAGAAAAAGAGTTTTATTAAAAGGATTTATCTTGACATGA
AGAACTGGCATTACTCAAATGGAGATCCAATTCTTCCCATCAGCTTGTTT
AAAAATAGTGAGATGCCTGCGGTCCTGGAAAGTGCCAAGAAAACTCTGGA
ATCAATTTTTGGTGAACTGGAGCCGTGTGTTTGTCCAACGAACAAAGAAA
TATCTTTCCTTTTAAATTCTCTTAATGATTCTTAAAAGCTTTCTAGACCA
T
BS22729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18063-RE | 1119 | CG18063-PE | 1..1119 | 17..1135 | 5595 | 100 | Plus |
| CG18063-RC | 1119 | CG18063-PC | 1..1119 | 17..1135 | 5595 | 100 | Plus |
| CG18063-RD | 1116 | CG18063-PD | 1..1116 | 17..1135 | 5515 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18063-RE | 1276 | CG18063-RE | 84..1202 | 17..1135 | 5595 | 100 | Plus |
| CG18063-RC | 1283 | CG18063-RC | 84..1202 | 17..1135 | 5595 | 100 | Plus |
| CG18063-RD | 1280 | CG18063-RD | 84..1199 | 17..1135 | 5515 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15958184..15958584 | 152..552 | 2005 | 100 | Plus |
| 2L | 23513712 | 2L | 15958697..15959028 | 551..882 | 1660 | 100 | Plus |
| 2L | 23513712 | 2L | 15959097..15959350 | 882..1135 | 1270 | 100 | Plus |
| 2L | 23513712 | 2L | 15958031..15958132 | 52..153 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:36:30 has no hits.
BS22729.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:35 Download gff for
BS22729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RE | 84..1200 | 17..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:16 Download gff for
BS22729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1200 | 17..1133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:42 Download gff for
BS22729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18063-RC | 84..1200 | 17..1133 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:42 Download gff for
BS22729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15957941..15957975 | 17..51 | 100 | -> | Plus |
| 2L | 15958031..15958132 | 52..153 | 100 | -> | Plus |
| 2L | 15958186..15958584 | 154..552 | 100 | -> | Plus |
| 2L | 15958699..15959027 | 553..881 | 100 | -> | Plus |
| 2L | 15959097..15959348 | 882..1133 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:16 Download gff for
BS22729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15957941..15957975 | 17..51 | 100 | -> | Plus |
| arm_2L | 15958031..15958132 | 52..153 | 100 | -> | Plus |
| arm_2L | 15958186..15958584 | 154..552 | 100 | -> | Plus |
| arm_2L | 15958699..15959027 | 553..881 | 100 | -> | Plus |
| arm_2L | 15959097..15959348 | 882..1133 | 100 | | Plus |
BS22729.pep Sequence
Translation from 16 to 1134
> BS22729.pep
MPKPSKQDSISLKSSNSVFLEDDQFENLEEEFLHNECISLPSDLTRVQSV
ILDYKQFKAARTIQRYIHGWLVRENFRKLQKSAIIIQKWWRRFEAQKNLL
YVAESALQSAVLAHYDKSATLIQTLYRGWWSRKHIFDLTMLKSVQIMLAK
DLIHSLVNYLHATKNSEMLPGIYTIRDSSICLETLEELMATFGFRFYNAN
ACYKMKETLSMVAQSRKTFTATSYFTDVPYPGFNDRGFCGPRQNSAMTLN
AKDPEHYELIHIFLSGSRKIGMTTAKLEQKIANIAEENRLNMFIKRDNKK
KSFIKRIYLDMKNWHYSNGDPILPISLFKNSEMPAVLESAKKTLESIFGE
LEPCVCPTNKEISFLLNSLNDS*
BS22729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18063-PE | 372 | CG18063-PE | 1..372 | 1..372 | 1934 | 100 | Plus |
| CG18063-PC | 372 | CG18063-PC | 1..372 | 1..372 | 1934 | 100 | Plus |
| CG18063-PD | 371 | CG18063-PD | 1..371 | 1..372 | 1918 | 99.7 | Plus |
| CG13544-PA | 367 | CG13544-PA | 45..354 | 44..356 | 398 | 30.6 | Plus |
| CG12448-PC | 352 | CG12448-PC | 52..309 | 45..307 | 374 | 31.2 | Plus |
