BS22731.complete Sequence
1226 bp assembled on 2011-01-25
GenBank Submission: KX801496
> BS22731.complete
GAAGTTATCAGTCGACATGAAGTACTCTACCTTGCTAATTCTGGGCCTAA
TTTTGACCGTGGCTCTCATGAGCGAGGCCAAGTCCAAGTCCAAAAAGCAG
AAGAATAAGCAGAATGGAATCCTGCCAATGGCCGAACCCTGCAAACCCAG
CAAGTGCAAATTACCCGATTGCCGCTGCTCCGATGCCGCTTTACCCACAT
CCAAGTTCCAGGGCAAGGAGAACCAGATTCCGCAGTTCGTGACCATCACT
TTCGATGACGCTGTAAATGCTGTCAACTTTGCCCAGTACGAGCTGCTTTT
CGATGGATTAATCAATCCAGATGGTTGTGGAGCCGCCGGTACCTTCTTTT
TGTCCCACGAATACACGGATTACGTGAGGGTGAATGCACTCTATAGGGCC
GGTCACGAGATAGCCCTACATTCGGTGACCCATGGAGATGGCACCGATTA
CTGGCGTTCAGCTGATGTTCCGACCATCGAGCGAGAGTTTGGAGCGCAGC
TCAAAATGTTAGAGACCTTTGCCAAAGTAAATCCCAAGAAGATACAGGGA
ATGCGCCTGCCGTTCCTCCAAATTTCGGGCAATAACACCTTTGAAGCAGC
CCGTCGCTTGGGCTTGACCTACGACAGTTCCTGGCCAACGCAAAAGTTCA
AGGATCCGGCCATGTGGCCGTACACCCTGGACTACAAGTCTAAGCAGGAC
TGTCAAATAGGCCCCTGTCCAGAGGCATCCATTCCCGGATTCTGGGTGAA
TCCCATGGTCACGTGGACCGATACTGAGGGCTACAGTTGCTCCATGATCG
ATGCTTGCGTTTACCCGCCGGAGGACGATATGGACGAGCTGTTCGACTGG
ATGATGGAGAACTTCAATAGGCACTATCTTGGCAATAGAGCACCCTTCGG
GATGTATCTGCATGCTGCGTGGTTTTCGCGGGGTCGCAATTACTTTGGTG
CCTTTAAAAAATTCATTAACCACCTGAACACCTATTCGGATGTGTATTTC
ACCGGAATTTCGCGAATGTTGGAGTACGTGAGAAAGCCGACGCTGGGCTC
CCCGTTCAAGGACTGTCCCGATTTGCCGGAGGCGGAGTGTCGAGCGGTCC
AGTGCCACGTCCAAAAGATGTCCACCGGCGAGGAGCGCTACATGACCGTA
TGCGACAAGTGCCCGTCCGTCTATCCCTGGCTGGACAATCCTCTGGGTCA
GCAGCTCTAAAAGCTTTCTAGACCAT
BS22731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda9-RB | 1194 | CG15918-PB | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| Cda9-RA | 1194 | CG15918-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda9-RB | 1637 | CG15918-RB | 353..1547 | 16..1210 | 5975 | 100 | Plus |
| Cda9-RA | 1306 | CG15918-RA | 22..1216 | 16..1210 | 5975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17129155..17129882 | 233..960 | 3640 | 100 | Plus |
| 2R | 25286936 | 2R | 17129995..17130244 | 961..1210 | 1250 | 100 | Plus |
| 2R | 25286936 | 2R | 17128832..17129051 | 16..235 | 1100 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:37:56 has no hits.
BS22731.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:36 Download gff for
BS22731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda9-RA | 1..1192 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:37 Download gff for
BS22731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda9-RA | 23..1214 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:15 Download gff for
BS22731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda9-RA | 23..1214 | 17..1208 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:15 Download gff for
BS22731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17128833..17129051 | 17..235 | 100 | -> | Plus |
| 2R | 17129158..17129882 | 236..960 | 100 | -> | Plus |
| 2R | 17129995..17130242 | 961..1208 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:37 Download gff for
BS22731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13016338..13016556 | 17..235 | 100 | -> | Plus |
| arm_2R | 13016663..13017387 | 236..960 | 100 | -> | Plus |
| arm_2R | 13017500..13017747 | 961..1208 | 100 | | Plus |
BS22731.pep Sequence
Translation from 16 to 1209
> BS22731.pep
MKYSTLLILGLILTVALMSEAKSKSKKQKNKQNGILPMAEPCKPSKCKLP
DCRCSDAALPTSKFQGKENQIPQFVTITFDDAVNAVNFAQYELLFDGLIN
PDGCGAAGTFFLSHEYTDYVRVNALYRAGHEIALHSVTHGDGTDYWRSAD
VPTIEREFGAQLKMLETFAKVNPKKIQGMRLPFLQISGNNTFEAARRLGL
TYDSSWPTQKFKDPAMWPYTLDYKSKQDCQIGPCPEASIPGFWVNPMVTW
TDTEGYSCSMIDACVYPPEDDMDELFDWMMENFNRHYLGNRAPFGMYLHA
AWFSRGRNYFGAFKKFINHLNTYSDVYFTGISRMLEYVRKPTLGSPFKDC
PDLPEAECRAVQCHVQKMSTGEERYMTVCDKCPSVYPWLDNPLGQQL*
BS22731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda9-PB | 397 | CG15918-PB | 1..397 | 1..397 | 2180 | 100 | Plus |
| Cda9-PA | 397 | CG15918-PA | 1..397 | 1..397 | 2180 | 100 | Plus |
| Cda5-PE | 1040 | CG31973-PE | 675..1020 | 39..388 | 687 | 41.8 | Plus |
| Cda5-PH | 891 | CG31973-PH | 527..871 | 39..388 | 666 | 40.8 | Plus |
| Cda5-PA | 1039 | CG31973-PA | 675..1019 | 39..388 | 666 | 40.8 | Plus |
