BS22742.complete Sequence
1076 bp assembled on 2011-01-25
GenBank Submission: KX801038
> BS22742.complete
GAAGTTATCAGTCGACATGGACGCCCCCGACGCCCCGCACACGCCCAAGT
ACATGGACGGCGGGAACACGGCGGCCAGCGTCACCCCCGGCATTAACATC
CCGGGAAAGTCCGCCTTCGTGGAGCTGCAGCAGCACGCCGCCGCCGGGTA
CGGCGGCATCCGGAGCACCTATCAGCATTTCGGACCGCAGGGCGGCCAGG
ATTCCGGCTTCCCCAGTCCGCGCAGCGCCCTCGGCTACCCGTTCCCGCCA
ATGCACCAGAACTCCTACTCCGGCTACCATCTGGGCAGCTACGCCCCGCC
CTGCGCCAGTCCACCGAAGGATGACTTCTCCATCTCCGATAAGTGCGAGG
ACTCCGGCCTCCGCGTCAACGGCAAGGGCAAGAAGATGCGCAAGCCCCGC
ACCATCTACAGCTCGCTGCAACTGCAGCAGCTCAACCGCCGCTTCCAGCG
TACCCAATACCTGGCCCTGCCGGAGCGAGCGGAGCTGGCGGCGAGTCTGG
GCCTCACGCAAACGCAGGTGAAAATCTGGTTCCAGAACCGACGCTCCAAG
TACAAAAAGATGATGAAGGCGGCCCAGGGCCCGGGCACCAACAGCGGCAT
GCCTCTGGGCGGGGGAGGACCCAATCCCGGCCAGCATAGCCCCAATCAAA
TGCACAGTGGTGAGTTAGCGAACGGAAGATTCCTCTGGGCGGCCTTAGAA
ACTAATGGAACTCTCGCTCTTGTCCATTCCACAGGCGGTAATAACGGCGG
TGGCTCGAACAGCGGCTCACCCTCACATTATCTACCTCCCGGACACAGTC
CAACGCCATCGAGTACACCCGTGTCCGAGCTTTCACCTGAATTCCCACCA
ACGGGCCTCAGTCCGCCGACGCAAGCGCCGTGGGACCAGAAACCGCACTG
GATCGACCACAAGCCGCCGCCCCAAATGACGCCACAACCACCTCATCCAG
CGGCAACGCTACATCCGCAGACGCACCACCACAACCCGCCGCCCCAGATG
GGTGGCTATGTGCCCCAGTACTGGTACCAGCCCGAGACGAATCCATCACT
AGTGACGTGAAAGCTTTCTAGACCAT
BS22742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dll-RC | 1044 | CG3629-PC | 1..1044 | 17..1060 | 5205 | 99.9 | Plus |
| Dll-RA | 984 | CG3629-PA | 1..644 | 17..660 | 3205 | 99.8 | Plus |
| Dll-RB | 969 | CG3629-PB | 1..644 | 17..660 | 3205 | 99.8 | Plus |
| Dll-RA | 984 | CG3629-PA | 643..965 | 734..1056 | 1615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dll-RC | 2244 | CG3629-RC | 615..1659 | 16..1060 | 5210 | 99.9 | Plus |
| Dll-RA | 3094 | CG3629-RA | 615..1259 | 16..660 | 3210 | 99.8 | Plus |
| Dll-RB | 2169 | CG3629-RB | 615..1259 | 16..660 | 3210 | 99.8 | Plus |
| Dll-RA | 3094 | CG3629-RA | 1258..1580 | 734..1056 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24833405..24833730 | 514..839 | 1630 | 100 | Plus |
| 2R | 25286936 | 2R | 24833796..24834017 | 839..1060 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 24819813..24820011 | 323..521 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 24817593..24817769 | 147..323 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 24815436..24815569 | 16..149 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:44:08 has no hits.
BS22742.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:39 Download gff for
BS22742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dll-RC | 608..1650 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:07 Download gff for
BS22742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dll-RC | 616..1658 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:09 Download gff for
BS22742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dll-RC | 616..1658 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:09 Download gff for
BS22742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24815437..24815567 | 17..147 | 99 | -> | Plus |
| 2R | 24817594..24817769 | 148..323 | 100 | -> | Plus |
| 2R | 24833409..24833730 | 518..839 | 100 | -> | Plus |
| 2R | 24833797..24834016 | 840..1059 | 100 | | Plus |
| 2R | 24819814..24820007 | 324..517 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:07 Download gff for
BS22742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20702960..20703090 | 17..147 | 99 | -> | Plus |
| arm_2R | 20705117..20705292 | 148..323 | 100 | -> | Plus |
| arm_2R | 20707337..20707530 | 324..517 | 100 | -> | Plus |
| arm_2R | 20721320..20721539 | 840..1059 | 100 | | Plus |
| arm_2R | 20720932..20721253 | 518..839 | 100 | -> | Plus |
BS22742.pep Sequence
Translation from 16 to 1059
> BS22742.pep
MDAPDAPHTPKYMDGGNTAASVTPGINIPGKSAFVELQQHAAAGYGGIRS
TYQHFGPQGGQDSGFPSPRSALGYPFPPMHQNSYSGYHLGSYAPPCASPP
KDDFSISDKCEDSGLRVNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLA
LPERAELAASLGLTQTQVKIWFQNRRSKYKKMMKAAQGPGTNSGMPLGGG
GPNPGQHSPNQMHSGELANGRFLWAALETNGTLALVHSTGGNNGGGSNSG
SPSHYLPPGHSPTPSSTPVSELSPEFPPTGLSPPTQAPWDQKPHWIDHKP
PPQMTPQPPHPAATLHPQTHHHNPPPQMGGYVPQYWYQPETNPSLVT*
BS22742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dll-PC | 347 | CG3629-PC | 1..347 | 1..347 | 1930 | 100 | Plus |
| Dll-PB | 322 | CG3629-PB | 1..322 | 1..347 | 1765 | 92.8 | Plus |
| Dll-PA | 327 | CG3629-PA | 1..322 | 1..347 | 1765 | 92.8 | Plus |
| otp-PC | 271 | CG10036-PC | 12..225 | 123..339 | 209 | 29.6 | Plus |
| otp-PJ | 374 | CG10036-PJ | 115..328 | 123..339 | 209 | 29.6 | Plus |
