BS22767.complete Sequence
911 bp assembled on 2011-01-25
GenBank Submission: KX800910
> BS22767.complete
GAAGTTATCAGTCGACATGAAGATCTTCGTAGCTGAAATAGTGCTACTAG
CGAGCTTGGTCCTTGGCGCAAGACTAGGATCCAGCACCCTGCTAACGAAT
GATTGCGGGACAACGAGGCACCCATCGAGAATTCGGCGGGTTGTTGGAGG
TAACGATGCGGACAGGTTCGCCAACCCCTGGATGGTCATGGTGCTCGGAG
AAAACAATGTCTTCTGCAGCGGTTCGCTAATCACTCGTCTTTTTGTCTTG
ACGTCAGCGAGCTGCCTTTTATCGCTTCCCAAACAAGTGATCTTGGGCGA
ATACGACAGGAACTGCACTTCTGCGGATTGCACGTCCATCCGCCAAGTGA
TTGATATCGATCAGAAGATTATCCATGGCCAATTCGGCTTGGAAACCGTC
AAAAAATATGATATTGCGCTACTTCGATTGGCAAAGAAGGTGTCGATCTC
AGACTACGTCAGACCAATTTGCCTGTCCGTCGATCGCCAAGTGGGACGTA
GCGTTCAACATTTCACTGCCACCGGCTGGGGCACTACCGAATGGAATGAA
CCCAGCACCATTTTACAGACAGTCACACTAAGTAAAATCAATAGAAAGTA
TTGTAAAGGCAGGCTAAGGCAGAATATCGATGCATCCCAGCTATGCGTTG
GCGGTCCAAGAAAGGACACTTGTAGTGGAGATGCTGGAGGCCCGCTGAGC
TTAACGTTGAAGATCGATGGTGACGGCAAGTGGAATAATAAATCTCGGGC
TTTTCTCATCGGCATTGTCAGCTATGGTAGTTCATCTTGTAGTGGTATCG
GTGTTTACACAAATGTTGAGCACTATATGGATTGGATTGTAAGAACCATC
AACAAAAGCAATACAGAAAAAATTGCCAACGTCCATAGAAGTTAAAAGCT
TTCTAGACCAT
BS22767.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33225-RB | 879 | CG33225-PB | 1..879 | 17..895 | 4395 | 100 | Plus |
| CG33225-RC | 924 | CG33225-PC | 52..924 | 23..895 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33225-RB | 979 | CG33225-RB | 14..894 | 15..895 | 4405 | 100 | Plus |
| CG33225-RC | 1074 | CG33225-RC | 117..989 | 23..895 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21591055..21591499 | 451..895 | 2225 | 100 | Plus |
| 2R | 25286936 | 2R | 21590445..21590669 | 15..239 | 1125 | 100 | Plus |
| 2R | 25286936 | 2R | 21590831..21591000 | 283..452 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 21590731..21590773 | 240..282 | 215 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| looper1 | 1881 | looper1 LOOPER1_DM 1881bp | 1170..1246 | 903..828 | 112 | 62.3 | Minus |
BS22767.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:50 Download gff for
BS22767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33225-RB | 62..938 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:51 Download gff for
BS22767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33225-RB | 16..892 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:16 Download gff for
BS22767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33225-RB | 16..892 | 17..893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:16 Download gff for
BS22767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21590447..21590669 | 17..239 | 100 | -> | Plus |
| 2R | 21590731..21590773 | 240..282 | 100 | -> | Plus |
| 2R | 21590831..21591000 | 283..452 | 100 | -> | Plus |
| 2R | 21591057..21591497 | 453..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:51 Download gff for
BS22767.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17477952..17478174 | 17..239 | 100 | -> | Plus |
| arm_2R | 17478236..17478278 | 240..282 | 100 | -> | Plus |
| arm_2R | 17478336..17478505 | 283..452 | 100 | -> | Plus |
| arm_2R | 17478562..17479002 | 453..893 | 100 | | Plus |
BS22767.pep Sequence
Translation from 16 to 894
> BS22767.pep
MKIFVAEIVLLASLVLGARLGSSTLLTNDCGTTRHPSRIRRVVGGNDADR
FANPWMVMVLGENNVFCSGSLITRLFVLTSASCLLSLPKQVILGEYDRNC
TSADCTSIRQVIDIDQKIIHGQFGLETVKKYDIALLRLAKKVSISDYVRP
ICLSVDRQVGRSVQHFTATGWGTTEWNEPSTILQTVTLSKINRKYCKGRL
RQNIDASQLCVGGPRKDTCSGDAGGPLSLTLKIDGDGKWNNKSRAFLIGI
VSYGSSSCSGIGVYTNVEHYMDWIVRTINKSNTEKIANVHRS*
BS22767.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33225-PB | 292 | CG33225-PB | 1..292 | 1..292 | 1519 | 100 | Plus |
| CG33225-PC | 307 | CG33225-PC | 18..307 | 3..292 | 1509 | 100 | Plus |
| CG30288-PC | 282 | CG30288-PC | 1..280 | 1..284 | 514 | 39.6 | Plus |
| CG30414-PC | 305 | CG30414-PC | 8..294 | 11..278 | 490 | 39.5 | Plus |
| CG30414-PB | 305 | CG30414-PB | 8..294 | 11..278 | 490 | 39.5 | Plus |
