BS22780.complete Sequence
1049 bp assembled on 2011-01-25
GenBank Submission: KX802938
> BS22780.complete
GAAGTTATCAGTCGACATGATTTCGGTAGCTCTGATTATCTTGTGCTTTT
TTCCGTTCGTGCAAAATGAGTACTTTCGTCCTTCGTACCAAGTCCTTGTG
CGCAAAAGGAATACTCAAGGAGATTTGATCGACGGCCATTGCTATGGCAA
TATCATTCAGAGTCGCTTGGTTTTAACATCAGCATCGTGTTTATTGAGTG
ATAACGATTTCGTAAATGGTAGGGAATTGTTAAATGCTGATGAGTTGGCG
GTATCATTCAAAGGCGAAGATTTGAACGAGTTGATATACCTCGTTGGTGG
CATAGACGTATATCCGCAGTTCAATTTCTCATCGTTGGACAATGATATAG
CGATCCTAAGTCTCAGTACGCAACTTCCGCTTTCCGAGCGAAACGATATT
GAATGGGTTTTAGTCGCTGACTATGATATTACCGATTTTCCATTGGAGGA
GGGTGTGGAATCTTACGTTTGGAAAAATGCGGATGGAGAAAACATATATC
CCGGTTATGGTGTTATTCATGAAAGTAATTTAGTTGGAATCATTTCCTAT
GGCTTGCCATTGAAAAATAAACGGGAATCTAATCTTGAAGTTCGGCGCCC
AAATAGGTTTACGCAATTAAATCCATATTTAAGTTGGATATATACAATAA
TACAGAATACAGAGATTGCGGACATTCAAAATAACAACTACAGTGTATCT
CTACCTTATCGTCAAAGAAAAATCGCAGAAATAGTGGAGGAATTCGTTGA
GCCTGATGCGGTGTATTTTCCAGACCCAGCAAACCCCATTAAAGATGAGA
TTGAAACTGAGGTAGAAGATTTGACGGACTCAGAAACTGATGCTGTAAAC
GTGGAAAGCGTCTCAGAAGATTTTTTAAACACGGAGGACCCTTTTAATGA
AAACATTGAAAGTGAGAAGGAATTCCTAAAAAACCGAGCAAACACATCTA
AGGCCAAAGGAGTTTGTGCATGGATATTCACATTTAATTTTCTTCTAGCG
ATAACTCGCACAATAAATTTCCATTTTTTTTAAAAGCTTTCTAGACCAT
BS22780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34043-RB | 1017 | CG34043-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34043-RB | 1227 | CG34043-RB | 43..1059 | 17..1033 | 5085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10280379..10280830 | 468..17 | 2260 | 100 | Minus |
| 2L | 23513712 | 2L | 10280053..10280320 | 734..467 | 1340 | 100 | Minus |
| 2L | 23513712 | 2L | 10279119..10279258 | 1033..894 | 700 | 100 | Minus |
| 2L | 23513712 | 2L | 10279629..10279688 | 792..733 | 285 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10279356..10279414 | 897..839 | 280 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10279520..10279570 | 839..789 | 255 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1360 | 3409 | 1360 1360 3409bp | 1133..1154 | 1034..1013 | 110 | 100 | Minus |
BS22780.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:57 Download gff for
BS22780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 17..1031 | 17..1031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:23 Download gff for
BS22780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 43..1057 | 17..1031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:25 Download gff for
BS22780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34043-RB | 43..1057 | 17..1031 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:25 Download gff for
BS22780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10279121..10279258 | 894..1031 | 100 | <- | Minus |
| 2L | 10279360..10279413 | 840..893 | 100 | <- | Minus |
| 2L | 10279520..10279570 | 789..839 | 100 | <- | Minus |
| 2L | 10279633..10279686 | 735..788 | 100 | <- | Minus |
| 2L | 10280053..10280320 | 467..734 | 100 | <- | Minus |
| 2L | 10280381..10280830 | 17..466 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:23 Download gff for
BS22780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10279121..10279258 | 894..1031 | 100 | <- | Minus |
| arm_2L | 10279360..10279413 | 840..893 | 100 | <- | Minus |
| arm_2L | 10279520..10279570 | 789..839 | 100 | <- | Minus |
| arm_2L | 10279633..10279686 | 735..788 | 100 | <- | Minus |
| arm_2L | 10280053..10280320 | 467..734 | 100 | <- | Minus |
| arm_2L | 10280381..10280830 | 17..466 | 100 | | Minus |
BS22780.pep Sequence
Translation from 16 to 1032
> BS22780.pep
MISVALIILCFFPFVQNEYFRPSYQVLVRKRNTQGDLIDGHCYGNIIQSR
LVLTSASCLLSDNDFVNGRELLNADELAVSFKGEDLNELIYLVGGIDVYP
QFNFSSLDNDIAILSLSTQLPLSERNDIEWVLVADYDITDFPLEEGVESY
VWKNADGENIYPGYGVIHESNLVGIISYGLPLKNKRESNLEVRRPNRFTQ
LNPYLSWIYTIIQNTEIADIQNNNYSVSLPYRQRKIAEIVEEFVEPDAVY
FPDPANPIKDEIETEVEDLTDSETDAVNVESVSEDFLNTEDPFNENIESE
KEFLKNRANTSKAKGVCAWIFTFNFLLAITRTINFHFF*
BS22780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34043-PB | 338 | CG34043-PB | 1..338 | 1..338 | 1760 | 100 | Plus |
