Clone BS22781 Report

Search the DGRC for BS22781

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:227
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG13540-RA
Protein status:BS22781.pep: full length peptide match
Sequenced Size:419

Clone Sequence Records

BS22781.complete Sequence

419 bp assembled on 2011-01-25

GenBank Submission: KX804081

> BS22781.complete
GAAGTTATCAGTCGACATGGCCAACGATCCCGGTAAGCCGGAAAAGTCCA
GGCCACGCTTCTGCACCCTGTTGAACCATGAGGTCGTCGATCCCAAAGAG
TTCATGGTGCACTTCGCCAAGCGGAGGAAGAATGAAATCATAATCCAGGG
TCAGGTCTGCGGTTGGTGCTACAACATAGATTACTTAAAAGATGAAAAAA
CAAAGTTCAAGAAGAAGCGGCCCAATCTTTCGGATGCGAGCGTCACCAAG
CAGCGCGCCACCTCACCACGAAGAGGAGCAATTGCAGACAACCCTCGTCA
ATTGGGTGGTGATCAGCACTGCTCGGAAAAGAGTTTTGCGCCCTCTGGTG
ACGAAATACCCACACCACGTGATTTGAAGGACAAACCTGGTGACCTTGCC
TAAAAGCTTTCTAGACCAT

BS22781.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13540-RB 408 CG13540-PB 22..408 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13540-RB 528 CG13540-RB 53..439 17..403 1935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23270584..23270970 17..403 1935 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:39:55 has no hits.

BS22781.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:57 Download gff for BS22781.complete
Subject Subject Range Query Range Percent Splice Strand
CG13540-RA 1..385 17..401 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:27 Download gff for BS22781.complete
Subject Subject Range Query Range Percent Splice Strand
CG13540-RB 53..437 17..401 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:31 Download gff for BS22781.complete
Subject Subject Range Query Range Percent Splice Strand
CG13540-RB 53..437 17..401 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:31 Download gff for BS22781.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23270584..23270968 17..401 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:27 Download gff for BS22781.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19158107..19158491 17..401 100   Plus

BS22781.pep Sequence

Translation from 16 to 402

> BS22781.pep
MANDPGKPEKSRPRFCTLLNHEVVDPKEFMVHFAKRRKNEIIIQGQVCGW
CYNIDYLKDEKTKFKKKRPNLSDASVTKQRATSPRRGAIADNPRQLGGDQ
HCSEKSFAPSGDEIPTPRDLKDKPGDLA*

BS22781.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13540-PB 135 CG13540-PB 8..135 1..128 694 100 Plus