BS22783.complete Sequence
1583 bp assembled on 2011-01-25
GenBank Submission: KX806491
> BS22783.complete
GAAGTTATCAGTCGACATGGGTCTGGAATTGATCGTAATTGTGTCGCTAA
TCGCCTTGGCCGGGGCCCAGCTTGTTCCGGAGAACTCGTGTCCGGACTAC
TTCCGCTATGTCAACGATGCCTTCCAGGGTGTGCAGGGCGAGATTACGCT
GCCCAGCTTGATGCGGGGTCGGAATCGCATAGATATACGTTTCTCGCAAC
GGGGTGAACAAGATGCCTCCGCCGTGGGTTCCCTGATCCCGTATCCGGAT
GAAAATGCGGTACGACAGCTTACAGGATCGGCCAAATTTCGAATAGCCGT
CAGACCAAATTCAAGCAACGGATTGCCCAAACTAACGCGTCTCTCCTACA
ACGAACAGATCTTGTGCTCGGCCAGCGAATACAGACCGCCCAATAGCTTC
TTTAATCGCTTCTATGAGCTCGACATCAGTGGTTCGCTGGCTTCGTTCCC
TTCCTCCGTATTCAATCCCTTCACCAGAGATGGCTTAGATGTGAATGTGC
AGACAGTATTCTATCCTACCTCATCCCGTGGCAATGATATCTGGCGTGGT
TTTACACAGCCCTGGACGACTGTGTCCAACAGAAGCCCAGCAGTGGTAAC
TCCAGCACCCACTCCAACTGAGATTTTCTGGAATCAACCAGTACCCAGTG
TTCCAATCACTTTTGCGCCACCTGTACCAACTATTACGAGCAGCCCAGCA
CCAGCACCACCACCACCACCACCACTTCCAACTCCACCAGCAGTTGTAAC
CGTTCCGCCAGCTACTCCACCACCTCAACGCTTTGATCCGCGATCCCAAA
TATCATCAGTAGTTTGCGGTCGAGAGGGCAGCACAACTCCGTTTATTGTG
CGTGGAAACGAATTCCCTCGAGGACAGTACCCCTGGCTATCGGCCGTCTA
TCACAAGGAGGTTCGAGCTCTGGCCTTTAAGTGCAGAGGATCCCTGATCT
CGTCCAGCATTGTAATTAGTGCCGCCCACTGTGTGCATCGGATGACGGAG
GACCGCGTGGTCGTCGGACTCGGGCGCTATGATCTGGATGACTACGGAGA
GGATGGGGCCGAGATGCGCAATGTAATGCGATTGCTTTGGCATCCGGATT
ACAATACCCGGTCGTATTCGGATGCCGATATCGCTTTGATCACCATTGAA
CGGCCAGTGACGTTTAACGACATTATTGCACCCATTTGCATGTGGACGGT
GGAGGCAAGCAGAACGGTGTCCACCACTGGCTTTATAGCGGGTTGGGGGA
GAGATGAGGACAGCTCCAGGACCCAGTATCCACGCGTGGTGGAGGCGGAG
ATTGCCAGTCCGACGGTCTGCGCCAGCACCTGGAGGGGCACCATGGTGAC
GGAGCGAAGTCTGTGCGCGGGAAATCGCGATGGATCTGGACCCTGTGTCG
GGGATTCCGGCGGTGGACTGATGGTCAAGCAGGGCGATCGATGGCTGCTC
CGGGGTATTGTGTCTGCAGGGGAACGCGGACCTGCCGGCACCTGCCAGCT
TAATCAGTATGTACTGTACTGCGATCTTTCCAAGCACATCAACTGGATAA
GCGAAAACATTCGCTGAAAGCTTTCTAGACCAT
BS22783.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sp212-RC | 1551 | CG33329-PC | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sp212-RC | 1681 | CG33329-RC | 77..1627 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14222750..14223532 | 1163..381 | 3915 | 100 | Minus |
| 3R | 32079331 | 3R | 14222128..14222533 | 1567..1162 | 2030 | 100 | Minus |
| 3R | 32079331 | 3R | 14223881..14224079 | 215..17 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 14223643..14223808 | 380..215 | 830 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 2012..2058 | 659..614 | 115 | 74.5 | Minus |
BS22783.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:17:52 Download gff for
BS22783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp212-RC | 77..1626 | 17..1566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:48 Download gff for
BS22783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp212-RC | 77..1626 | 17..1566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:09 Download gff for
BS22783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp212-RC | 77..1626 | 17..1566 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:09 Download gff for
BS22783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14222129..14222533 | 1162..1566 | 100 | <- | Minus |
| 3R | 14222752..14223532 | 381..1161 | 100 | <- | Minus |
| 3R | 14223643..14223808 | 215..380 | 100 | <- | Minus |
| 3R | 14223882..14224079 | 17..214 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:48 Download gff for
BS22783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10047851..10048255 | 1162..1566 | 100 | <- | Minus |
| arm_3R | 10048474..10049254 | 381..1161 | 100 | <- | Minus |
| arm_3R | 10049365..10049530 | 215..380 | 100 | <- | Minus |
| arm_3R | 10049604..10049801 | 17..214 | 100 | | Minus |
BS22783.pep Sequence
Translation from 16 to 1566
> BS22783.pep
MGLELIVIVSLIALAGAQLVPENSCPDYFRYVNDAFQGVQGEITLPSLMR
GRNRIDIRFSQRGEQDASAVGSLIPYPDENAVRQLTGSAKFRIAVRPNSS
NGLPKLTRLSYNEQILCSASEYRPPNSFFNRFYELDISGSLASFPSSVFN
PFTRDGLDVNVQTVFYPTSSRGNDIWRGFTQPWTTVSNRSPAVVTPAPTP
TEIFWNQPVPSVPITFAPPVPTITSSPAPAPPPPPPLPTPPAVVTVPPAT
PPPQRFDPRSQISSVVCGREGSTTPFIVRGNEFPRGQYPWLSAVYHKEVR
ALAFKCRGSLISSSIVISAAHCVHRMTEDRVVVGLGRYDLDDYGEDGAEM
RNVMRLLWHPDYNTRSYSDADIALITIERPVTFNDIIAPICMWTVEASRT
VSTTGFIAGWGRDEDSSRTQYPRVVEAEIASPTVCASTWRGTMVTERSLC
AGNRDGSGPCVGDSGGGLMVKQGDRWLLRGIVSAGERGPAGTCQLNQYVL
YCDLSKHINWISENIR*
BS22783.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sp212-PC | 516 | CG33329-PC | 1..516 | 1..516 | 2746 | 100 | Plus |
| CG9649-PA | 504 | CG9649-PA | 7..498 | 3..511 | 579 | 32.3 | Plus |
| CG31326-PA | 520 | CG31326-PA | 9..518 | 5..515 | 525 | 31.1 | Plus |
| CG9631-PA | 439 | CG9631-PA | 129..437 | 197..515 | 481 | 32.9 | Plus |
| gd-PC | 528 | CG1505-PC | 256..524 | 285..512 | 371 | 33.7 | Plus |
| CG9631-PA | 439 | CG9631-PA | 6..143 | 3..138 | 165 | 31.2 | Plus |
