BS22790.complete Sequence
935 bp assembled on 2011-01-25
GenBank Submission: KX805370
> BS22790.complete
GAAGTTATCAGTCGACATGATACGTTTGGGGAACCAAATGTGCCGGCAAG
TGGCCTTTAATATACAGACTGTATTCCGAAACCCGGGCACCGCGAACAAT
CCGAGATTAATCACCAGAAAGATGACACAACAGCGACCGCCGGTGAATTG
GACAACCAGTATTCCCAATCAGGCGGCGAAGGACAAGGAGAAGATAGCTC
CTTTGGGATGGTTCCTCCTGCTCATACCGGCCACCACTTTTGGCTTGGGC
TGCTGGCAAGTGAAGCGCAAGATTTGGAAGGAGCAGTTGATCAAGGATCT
CAACAAGCAGCTGAGCACGGCGCCTGTGGCTCTACCAGACGATCTCACTG
ACTTGGCCCAAATGGAGTACCGCCTGGTCAAGATCCGTGGACGTTTCCTT
CACGACAAGGAGATGCGCCTGGGTCCGAGATCGCTGATACGGCCCGATGG
CGTGGAAACCCAAGGAGGACTCTTCTCGCAGCGCGACTCGGGCAATGGCT
ATCTAATAGTAACCCCTTTTCAGCTGGCAGATAGAGACGACATAGTGCTC
GTCAATCGGGGCTGGGTGTCCCGCAAGCAAGTGGAGCCGGAAACCAGGCC
GCTGGGCCAACAACAGGCGGAAGTGGAGCTCACCGCCGTCGTGCGCAAAG
GAGAGGCGCGTCCGCAGTTCACACCCGACCACAAGGGCAATGTCTATCTC
TATCGCGACTTGGCGCGCATGTGCGCCGCCACAGGAGCAGCTCCTGTGTT
CCTGGACGCCGTCTACGATCCGCAAACGGCTGCACATGCTCCAATCGGTG
GACAGACACGCGTTACCCTGCGCAACGATCATCTGTCGTACCTGGTGACC
TGGTTCAGTCTATCGGCGGCCACCTCCTTTTTGTGGTACCGCCAAATAGT
CAAGAGGATACCCTTCTGAAAGCTTTCTAGACCAT
BS22790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Surf1-RA | 903 | CG9943-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Surf1-RA | 1055 | CG9943-RA | 88..992 | 17..921 | 4525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6959140..6959523 | 538..921 | 1920 | 100 | Plus |
3L | 28110227 | 3L | 6958433..6958636 | 17..220 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 6958889..6959083 | 343..537 | 975 | 100 | Plus |
3L | 28110227 | 3L | 6958704..6958826 | 220..342 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:43:26 has no hits.
BS22790.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:18:00 Download gff for
BS22790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Surf1-RA | 88..989 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:57 Download gff for
BS22790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Surf1-RA | 88..989 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:45 Download gff for
BS22790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Surf1-RA | 88..989 | 17..918 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:45 Download gff for
BS22790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6958889..6959083 | 343..537 | 100 | -> | Plus |
3L | 6959140..6959520 | 538..918 | 100 | | Plus |
3L | 6958433..6958636 | 17..220 | 100 | -> | Plus |
3L | 6958705..6958826 | 221..342 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:57 Download gff for
BS22790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6951989..6952183 | 343..537 | 100 | -> | Plus |
arm_3L | 6951533..6951736 | 17..220 | 100 | -> | Plus |
arm_3L | 6951805..6951926 | 221..342 | 100 | -> | Plus |
arm_3L | 6952240..6952620 | 538..918 | 100 | | Plus |
BS22790.pep Sequence
Translation from 16 to 918
> BS22790.pep
MIRLGNQMCRQVAFNIQTVFRNPGTANNPRLITRKMTQQRPPVNWTTSIP
NQAAKDKEKIAPLGWFLLLIPATTFGLGCWQVKRKIWKEQLIKDLNKQLS
TAPVALPDDLTDLAQMEYRLVKIRGRFLHDKEMRLGPRSLIRPDGVETQG
GLFSQRDSGNGYLIVTPFQLADRDDIVLVNRGWVSRKQVEPETRPLGQQQ
AEVELTAVVRKGEARPQFTPDHKGNVYLYRDLARMCAATGAAPVFLDAVY
DPQTAAHAPIGGQTRVTLRNDHLSYLVTWFSLSAATSFLWYRQIVKRIPF
*
BS22790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Surf1-PA | 300 | CG9943-PA | 1..300 | 1..300 | 1578 | 100 | Plus |