Clone BS22790 Report

Search the DGRC for BS22790

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:227
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptSurf1-RA
Protein status:BS22790.pep: gold
Sequenced Size:935

Clone Sequence Records

BS22790.complete Sequence

935 bp assembled on 2011-01-25

GenBank Submission: KX805370

> BS22790.complete
GAAGTTATCAGTCGACATGATACGTTTGGGGAACCAAATGTGCCGGCAAG
TGGCCTTTAATATACAGACTGTATTCCGAAACCCGGGCACCGCGAACAAT
CCGAGATTAATCACCAGAAAGATGACACAACAGCGACCGCCGGTGAATTG
GACAACCAGTATTCCCAATCAGGCGGCGAAGGACAAGGAGAAGATAGCTC
CTTTGGGATGGTTCCTCCTGCTCATACCGGCCACCACTTTTGGCTTGGGC
TGCTGGCAAGTGAAGCGCAAGATTTGGAAGGAGCAGTTGATCAAGGATCT
CAACAAGCAGCTGAGCACGGCGCCTGTGGCTCTACCAGACGATCTCACTG
ACTTGGCCCAAATGGAGTACCGCCTGGTCAAGATCCGTGGACGTTTCCTT
CACGACAAGGAGATGCGCCTGGGTCCGAGATCGCTGATACGGCCCGATGG
CGTGGAAACCCAAGGAGGACTCTTCTCGCAGCGCGACTCGGGCAATGGCT
ATCTAATAGTAACCCCTTTTCAGCTGGCAGATAGAGACGACATAGTGCTC
GTCAATCGGGGCTGGGTGTCCCGCAAGCAAGTGGAGCCGGAAACCAGGCC
GCTGGGCCAACAACAGGCGGAAGTGGAGCTCACCGCCGTCGTGCGCAAAG
GAGAGGCGCGTCCGCAGTTCACACCCGACCACAAGGGCAATGTCTATCTC
TATCGCGACTTGGCGCGCATGTGCGCCGCCACAGGAGCAGCTCCTGTGTT
CCTGGACGCCGTCTACGATCCGCAAACGGCTGCACATGCTCCAATCGGTG
GACAGACACGCGTTACCCTGCGCAACGATCATCTGTCGTACCTGGTGACC
TGGTTCAGTCTATCGGCGGCCACCTCCTTTTTGTGGTACCGCCAAATAGT
CAAGAGGATACCCTTCTGAAAGCTTTCTAGACCAT

BS22790.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
Surf1-RA 903 CG9943-PA 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
Surf1-RA 1055 CG9943-RA 88..992 17..921 4525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6959140..6959523 538..921 1920 100 Plus
3L 28110227 3L 6958433..6958636 17..220 1020 100 Plus
3L 28110227 3L 6958889..6959083 343..537 975 100 Plus
3L 28110227 3L 6958704..6958826 220..342 615 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:43:26 has no hits.

BS22790.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:18:00 Download gff for BS22790.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 88..989 17..918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:57 Download gff for BS22790.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 88..989 17..918 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:45 Download gff for BS22790.complete
Subject Subject Range Query Range Percent Splice Strand
Surf1-RA 88..989 17..918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:45 Download gff for BS22790.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6958889..6959083 343..537 100 -> Plus
3L 6959140..6959520 538..918 100   Plus
3L 6958433..6958636 17..220 100 -> Plus
3L 6958705..6958826 221..342 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:57 Download gff for BS22790.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6951989..6952183 343..537 100 -> Plus
arm_3L 6951533..6951736 17..220 100 -> Plus
arm_3L 6951805..6951926 221..342 100 -> Plus
arm_3L 6952240..6952620 538..918 100   Plus

BS22790.pep Sequence

Translation from 16 to 918

> BS22790.pep
MIRLGNQMCRQVAFNIQTVFRNPGTANNPRLITRKMTQQRPPVNWTTSIP
NQAAKDKEKIAPLGWFLLLIPATTFGLGCWQVKRKIWKEQLIKDLNKQLS
TAPVALPDDLTDLAQMEYRLVKIRGRFLHDKEMRLGPRSLIRPDGVETQG
GLFSQRDSGNGYLIVTPFQLADRDDIVLVNRGWVSRKQVEPETRPLGQQQ
AEVELTAVVRKGEARPQFTPDHKGNVYLYRDLARMCAATGAAPVFLDAVY
DPQTAAHAPIGGQTRVTLRNDHLSYLVTWFSLSAATSFLWYRQIVKRIPF
*

BS22790.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Surf1-PA 300 CG9943-PA 1..300 1..300 1578 100 Plus