BS22791.complete Sequence
1160 bp assembled on 2011-01-25
GenBank Submission: KX803553
> BS22791.complete
GAAGTTATCAGTCGACATGAAGCATTTGTGTCTGCTTCTTTTGGCCACGT
CGGTATCTTGTCGCTTTGCCGACGATTTCTACCAACTTTTGGCCAAGGAA
AATGCGGCCAATAATCTCATTTCCTCTCCCCTTTCCGTGGAAATCGCACT
GAGCATGGCCTACATGGGAGCCAGGGCAAAGACAGCCCAAGAAATGAGGA
ATGTTTTGAAACTGCCCGATGACAAAAAGGAAGTGGCAGCCAAATACAAG
GACCTTCTGAGTAAACTCGAAGGACGCGAGAAGGTAGCCACTCTCAGTTT
GGCTAATCGCATATACGTGAACAAAAAGTTCCAGCTAGTACCGAGTTACA
ATCAGATGGTCAAGGATTCATTTATGGCTGAAGCGGAGGCAATCGACATT
GTCGATCCCAATAAGGCTTCTTCAATTGTCAATAATTGGGTAGATAATCA
GACGCGTGGTAAAATCAAAGACTTAGTTTCATCCAATGACATGTCGAAAA
TGGAATTGATCGTCTTAAATGCCATATACTTTAAAGGCCAGTGGGAGTAC
AAATTTAATCCCAAGTTAACGAAGAAGAGGAATTTCCGTGTTTCGGATCA
AAAGAGTGTTCCTGTCGAGATGATGTCACTATTTCAATCATTTAGGGCCG
CACATGATAGTGAACTGGGTGCCAAAATTATCGAGCTGCCCTACAGAAAT
TCAAGCCTGTCCATGCTAATTTTTCTACCGGACCAGGTCGATGGACTATC
AGAGCTGGAGAAAAAGATTGTAGGATTCAAACCGAAACTTTCCAAAATGG
ATGTAACTTTAAGGCTTCCCAAGTTTAAAATCGAATTCTTCGCTCAACTA
AACAAAGTTCTTGTGGCGATGGGCATACAAGATGCGTTCGAAAAATCTGC
TGACTTCAAAGATCTGGTCGAAAACAGTAACGTTCATGTGAAAAAAGTCA
TTCATAAGGCGTTCATCGAGGTTAATGAAGAAGGAGCTGAGGCAGCGGCT
GCAACAGCTTTACTTTTCGTGCGCTATAGTATGCCTATGCCGTCATCTCA
AATGGTTTTTAATGCCGATCATCCTTTTGCCTATGTCATTCGCGATAGGG
AAACCATTTATTTCCAGGGCCACTTTGTGAAACCGAATGAATAAAAGCTT
TCTAGACCAT
BS22791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28F-RA | 1128 | CG8137-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
| Spn38F-RA | 1119 | CG9334-PA | 1..1110 | 17..1135 | 2655 | 83.1 | Plus |
| Spn38F-RB | 1113 | CG9334-PB | 1..1104 | 17..1135 | 2580 | 82.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28F-RA | 1213 | CG8137-RA | 35..1164 | 17..1146 | 5650 | 100 | Plus |
| Spn38F-RA | 1198 | CG9334-RA | 12..1121 | 17..1135 | 2655 | 83.1 | Plus |
| Spn38F-RB | 1192 | CG9334-RB | 12..1115 | 17..1135 | 2580 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8240855..8241693 | 868..30 | 4195 | 100 | Minus |
| 2L | 23513712 | 2L | 20837066..20837904 | 873..32 | 2150 | 84 | Minus |
| 2L | 23513712 | 2L | 8240463..8240604 | 1146..1005 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 8240657..8240796 | 1007..868 | 700 | 100 | Minus |
| 2L | 23513712 | 2L | 20836874..20837013 | 1007..868 | 325 | 82.1 | Minus |
| 2L | 23513712 | 2L | 20836698..20836782 | 1135..1051 | 260 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:44:07 has no hits.
BS22791.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:18:00 Download gff for
BS22791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn2-RA | 74..1199 | 17..1142 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:07 Download gff for
BS22791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28F-RA | 35..1160 | 17..1142 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:59 Download gff for
BS22791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28F-RA | 35..1160 | 17..1142 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:59 Download gff for
BS22791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8240467..8240601 | 1008..1142 | 100 | <- | Minus |
| 2L | 8240657..8240795 | 869..1007 | 100 | <- | Minus |
| 2L | 8240855..8241693 | 30..868 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:07 Download gff for
BS22791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8240467..8240601 | 1008..1142 | 100 | <- | Minus |
| arm_2L | 8240657..8240795 | 869..1007 | 100 | <- | Minus |
| arm_2L | 8240855..8241693 | 30..868 | 100 | <- | Minus |
BS22791.pep Sequence
Translation from 16 to 1143
> BS22791.pep
MKHLCLLLLATSVSCRFADDFYQLLAKENAANNLISSPLSVEIALSMAYM
GARAKTAQEMRNVLKLPDDKKEVAAKYKDLLSKLEGREKVATLSLANRIY
VNKKFQLVPSYNQMVKDSFMAEAEAIDIVDPNKASSIVNNWVDNQTRGKI
KDLVSSNDMSKMELIVLNAIYFKGQWEYKFNPKLTKKRNFRVSDQKSVPV
EMMSLFQSFRAAHDSELGAKIIELPYRNSSLSMLIFLPDQVDGLSELEKK
IVGFKPKLSKMDVTLRLPKFKIEFFAQLNKVLVAMGIQDAFEKSADFKDL
VENSNVHVKKVIHKAFIEVNEEGAEAAAATALLFVRYSMPMPSSQMVFNA
DHPFAYVIRDRETIYFQGHFVKPNE*
BS22791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28F-PA | 375 | CG8137-PA | 1..375 | 1..375 | 1886 | 100 | Plus |
| Spn38F-PA | 372 | CG9334-PA | 1..370 | 1..373 | 1349 | 72.7 | Plus |
| Spn38F-PB | 370 | CG9334-PB | 1..368 | 1..373 | 1335 | 72.1 | Plus |
| Spn28B-PB | 378 | CG6717-PB | 1..376 | 1..373 | 860 | 48.4 | Plus |
| Spn28B-PA | 378 | CG6717-PA | 1..376 | 1..373 | 860 | 48.4 | Plus |
