Clone BS22792 Report

Search the DGRC for BS22792

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:227
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG12213-RB
Protein status:BS22792.pep: full length peptide match
Sequenced Size:1577

Clone Sequence Records

BS22792.complete Sequence

1577 bp assembled on 2011-01-25

GenBank Submission: KX800284

> BS22792.complete
GAAGTTATCAGTCGACATGAGTTCGGCTCGCTTCGCGCGCTCAGGGCGCG
TCCGTATCTGCATCCTGATGAGCATGTTCATCGTGCTCATCATGATGATT
GTTATCTACCAAATGTCCCAACACCAATTGGACGAGAGCCGCGCCTTCCA
AGAGGGCCTCAGTGTCCAGATGCAATCCCTGAATGCCGAAAAACTTACCG
CCGAGAAGAGAATGAGCGCGCTGCGCTCGGAAAAGATGACCCTGCAGGAG
CAGTACGAGGGTCAGTTGGCGGAGGCACTGCAGAAGCAGCACGACACGGA
ACACGCACTGCAGGAGAAGTTCGACGCTCAGGTGGAAAAGTACAAGCTGC
TGGAGATTAAGTACACCAACCTGGAGGCCGAGTTCGTCAAGAGCAAGAAG
AAACACATCGAGGACACGAACGCTTTCGACCAAAAGCTGCAAAAGGTCCT
GGCGGATCTTCATAAGGACAAGGCCAGCAAGGAGCGCGAGGTGGCTGCCT
GGAAGGAAAAGCTGGACAAGCTACAGCGCGATGGTGAGCACAAGATTCAC
GCCCTGGAAGCCACAATTGCGGAATTCAAGACCAACTGCAACTATGTACC
TAAAGTCCAGCCCGCCGAGGCACCGGTCCAGGGACACCAGCAGCAACTGA
ATAAGCCCGCCGAGCAGATGCCCACCACGCACCACTCAAATCCTGCCCAG
CTAGCGCACAGCATTGAAAAGCCCCGCAACGAGAAGTCCTTCGATGCCCA
AGTGCAAATTGTGCCCAAATCGGTCAGTGAGAAGCAACAGCAGGAGGAGC
CGCAACTATCCGGCGGTCCTGTTTCCCCGTTAAGTGCACCCCGCAAGAGC
AGCACCCAAGCCTCAGTGGGCAGCGCTTCGGACAAGAAAGCCGGTGATGC
CCCCAACGCATCTGTAGCCCCAAAAGTTAGTAGCAGCGGCCTTCCCCCGC
TTGCAGTGCCACCAGCGAAGACTGAGCGCAAACTTCCCGAAAACGTGGCT
CCCATTCCCGAGAACTTTGAAGACAAAGCGGATACTAAGGGCGACGCTGT
CGATGTAGACAACGCCGCCGAAGACCTGCCGAAGAACGAGAACAACAATC
GTTACGCCAACGCAGTAAATGATATGGAGGGCAACAAAAATGTAGGCGTA
GCTCCCAAACCCATCGAGGATTCGGGCGCTCACGAAGTTAAGGATGCGTT
AAACGAGCCTAGCTTTAATTTGCCCGCCGCTGGTGGCGGCCAGAATTTCT
TCGATGGCGAATTGCCGGCACCTGGTCCCGGACCCGTTCCCGATGAAACG
GCCAAACAGATGGCCGAGGCAGCCGGTGCCGGAGGAGGTGGCGACGGAGA
TGACGACGACGATGTGGGTGATGTGGCCGTGAAACAGCCACAGCATTTGC
TCGATACAGACAATCTAAACAACGAAATCGTTGCTGACCAGGGTAAGGAG
TTCGCCGAAGGCATCCACCTGGAAGACGGCATGGATGAAGATCAAGATGA
GGACGACTATTCCAATGGTGGTGCAGCACGCAAGAAGGGAGGCGAGGTTA
TTAGACACTAAAAGCTTTCTAGACCAT

BS22792.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12213-RD 1545 CG12213-PD 1..1545 17..1561 7725 100 Plus
CG12213-RB 1545 CG12213-PB 1..1545 17..1561 7725 100 Plus
CG12213-RE 1578 CG12213-PE 775..1578 758..1561 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12213-RD 2640 CG12213-RD 345..1889 17..1561 7725 100 Plus
CG12213-RB 1714 CG12213-RB 111..1655 17..1561 7725 100 Plus
CG12213-RE 2439 CG12213-RE 885..1688 758..1561 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11965545..11966286 1499..758 3710 100 Minus
3R 32079331 3R 11966796..11967125 506..177 1650 100 Minus
3R 32079331 3R 11966488..11966741 757..504 1270 100 Minus
3R 32079331 3R 11967188..11967347 176..17 800 100 Minus
3R 32079331 3R 11965425..11965487 1561..1499 315 100 Minus
Blast to na_te.dros performed 2014-11-26 15:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 223..267 1322..1366 117 73.3 Plus
TART-A 13424 TART-A 13424bp 11401..11445 1322..1366 117 73.3 Plus
G4 3856 G4 G4_DM 3856bp 2192..2246 1362..1416 113 67.3 Plus

BS22792.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:18:01 Download gff for BS22792.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 168..1710 17..1559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:20 Download gff for BS22792.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 111..1653 17..1559 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:29 Download gff for BS22792.complete
Subject Subject Range Query Range Percent Splice Strand
CG12213-RB 111..1653 17..1559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:29 Download gff for BS22792.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11965427..11965486 1500..1559 100 <- Minus
3R 11965545..11966286 758..1499 100 <- Minus
3R 11966488..11966739 506..757 100 <- Minus
3R 11966797..11967125 177..505 100 <- Minus
3R 11967188..11967347 17..176 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:20 Download gff for BS22792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7791149..7791208 1500..1559 100 <- Minus
arm_3R 7791267..7792008 758..1499 100 <- Minus
arm_3R 7792210..7792461 506..757 100 <- Minus
arm_3R 7792519..7792847 177..505 100 <- Minus
arm_3R 7792910..7793069 17..176 100   Minus

BS22792.pep Sequence

Translation from 16 to 1560

> BS22792.pep
MSSARFARSGRVRICILMSMFIVLIMMIVIYQMSQHQLDESRAFQEGLSV
QMQSLNAEKLTAEKRMSALRSEKMTLQEQYEGQLAEALQKQHDTEHALQE
KFDAQVEKYKLLEIKYTNLEAEFVKSKKKHIEDTNAFDQKLQKVLADLHK
DKASKEREVAAWKEKLDKLQRDGEHKIHALEATIAEFKTNCNYVPKVQPA
EAPVQGHQQQLNKPAEQMPTTHHSNPAQLAHSIEKPRNEKSFDAQVQIVP
KSVSEKQQQEEPQLSGGPVSPLSAPRKSSTQASVGSASDKKAGDAPNASV
APKVSSSGLPPLAVPPAKTERKLPENVAPIPENFEDKADTKGDAVDVDNA
AEDLPKNENNNRYANAVNDMEGNKNVGVAPKPIEDSGAHEVKDALNEPSF
NLPAAGGGQNFFDGELPAPGPGPVPDETAKQMAEAAGAGGGGDGDDDDDV
GDVAVKQPQHLLDTDNLNNEIVADQGKEFAEGIHLEDGMDEDQDEDDYSN
GGAARKKGGEVIRH*

BS22792.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12213-PD 514 CG12213-PD 1..514 1..514 2647 100 Plus
CG12213-PB 514 CG12213-PB 1..514 1..514 2647 100 Plus
CG12213-PE 525 CG12213-PE 1..525 1..514 2625 97.9 Plus
CG12213-PC 581 CG12213-PC 1..581 1..514 1926 70.5 Plus