Clone BS22805 Report

Search the DGRC for BS22805

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:228
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptAtg12-RB
Protein status:BS22805.pep: full length peptide match
Sequenced Size:368

Clone Sequence Records

BS22805.complete Sequence

368 bp assembled on 2011-01-25

GenBank Submission: KX805673

> BS22805.complete
GAAGTTATCAGTCGACATGGCAGAGACACCAGAATCCCAGGCAGCGCTGA
GCACTTCCTCCTCCACACCTGCAGATAAGGATGGTTCCAAAATTTGTATC
CTTCTGAACGCCACTGGCAATGTGCCCATCATCAAAAAGCGAACCTGGAC
CGTAGATCCCAACAAGACAGTCGGCTGGATACAGACGTTCATCCACAAGT
TTCTGAAACTCGATGCCAGCGAGCAAATTTTCCTGTACGTTAATCAGACA
TTTGCACCTGCCCCGGATCAGATAATCAAGAACTTGTACGAGTGCCATGG
AACCAATGGGAAACTGGTGCTCTACTACTGCAAGAATCAGGCGTGGGGCT
AAAAGCTTTCTAGACCAT

BS22805.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
Atg12-RB 336 CG10861-PB 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Atg12-RB 469 CG10861-RB 50..386 17..353 1685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12137159..12137295 93..229 685 100 Plus
3L 28110227 3L 12137353..12137476 230..353 620 100 Plus
3L 28110227 3L 12137016..12137091 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:24:49 has no hits.

BS22805.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:14:53 Download gff for BS22805.complete
Subject Subject Range Query Range Percent Splice Strand
Atg12-RB 243..576 17..350 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:03 Download gff for BS22805.complete
Subject Subject Range Query Range Percent Splice Strand
Atg12-RB 50..383 17..350 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:46 Download gff for BS22805.complete
Subject Subject Range Query Range Percent Splice Strand
Atg12-RB 50..383 17..350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:46 Download gff for BS22805.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12137016..12137091 17..92 100 -> Plus
3L 12137159..12137295 93..229 100 -> Plus
3L 12137353..12137473 230..350 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:03 Download gff for BS22805.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130116..12130191 17..92 100 -> Plus
arm_3L 12130259..12130395 93..229 100 -> Plus
arm_3L 12130453..12130573 230..350 100   Plus

BS22805.pep Sequence

Translation from 16 to 351

> BS22805.pep
MAETPESQAALSTSSSTPADKDGSKICILLNATGNVPIIKKRTWTVDPNK
TVGWIQTFIHKFLKLDASEQIFLYVNQTFAPAPDQIIKNLYECHGTNGKL
VLYYCKNQAWG*

BS22805.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Atg12-PB 111 CG10861-PB 1..111 1..111 594 100 Plus