BS22866.complete Sequence
965 bp assembled on 2011-01-25
GenBank Submission: KX800497
> BS22866.complete
GAAGTTATCAGTCGACATGGCCAGATATCAGAGTAGCCTTAGCCTCGGAA
TCCTTGTGGTCCTGCTAATCGATCAGCTGGCCAACGCCCAGTTCGTTCCG
GGCCCAATCTCTGGACCAATTCCCCGCCAGCAGAGATCGCTCTTTGGGTC
CGGTCCGCCGCCCGGTTGGAGTAGCGGTGGCCTCAGTCACGGCTGGAATA
GTCCCAGCTTTGAGTTTAGCCCGCTGCCGCCATCGCACAGTTCGCATGTG
ACCAAGGACGAGTTGCTGGCCCTGCTAGCCGCCTGGAAGGATGTGGCCAA
GCCGACGACTCCGGCACCGGAGCCAGAGCCCGAGGAGCCCGAACCCGAGC
CGGAGGCCACAACGCCAGCGCCGCCAGAGGATGTGGACGAACCGGAACCG
GAGCCCGAGGCACCGGCACCGGCACCGGCACCAGAGGCGCCAGCTGGTCC
ACCACCCGGCGTTCCCGTCACCGTCTCCCTGCCCGCCCTGGTGCCCATTC
AATTGGCGGCCATGTGGCAACAGCCGGCGCTGGGAGCAGCGGCCGGCGGA
CTGGGTCCTCTAAATCTGGGCGGCCTGGGTCTGGGCGGTGGCATTGCATT
GAACACGCTCGGCGGCGGTGCGGTAGCAGCCGGAGGAGCTATAGCGGCCG
GAGGCGGTGGAGCGGCGGCCGCCGGAGCAGCAGCAGCAGCGTCACGTTCC
GGAGTGGCACGCCCTCGAGCCCGGGCCAGGATCGGAGGACGTGCGTCCAA
TGCCCAGCAGCCCGCCATACGTTTCCCGGTGGCCAATCCGCGCAGCTTCA
CCTCGAACAACTATGTGGCGCCCAGGCCGCGTTATTATCGCGATACGGAG
CCCATGCGCGTCAACGTAATGGCACCACCGCCGCCGTCGCCCTACCAAAT
GGCCAATATCCAGGGTCCCGTTCAGCTGGTGCCCGCCTACTGGCAATAGA
AGCTTTCTAGACCAT
BS22866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42449-RA | 933 | CG42449-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
| CG42449-RB | 846 | CG42449-PB | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42449-RA | 1146 | CG42449-RA | 22..954 | 17..949 | 4665 | 100 | Plus |
| CG42449-RB | 1217 | CG42449-RB | 22..863 | 17..858 | 4210 | 100 | Plus |
| CG42449-RB | 1217 | CG42449-RB | 934..1025 | 858..949 | 460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5683261..5684102 | 17..858 | 4210 | 100 | Plus |
| X | 23542271 | X | 5684173..5684264 | 858..949 | 460 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..753 | 692..582 | 132 | 62.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2860 | 617..694 | 120 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6849 | 621..694 | 109 | 60.8 | Plus |
BS22866.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:14:52 Download gff for
BS22866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42449-RA | 22..954 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:01 Download gff for
BS22866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42449-RA | 22..954 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:43 Download gff for
BS22866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42449-RA | 22..954 | 17..949 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:43 Download gff for
BS22866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5683261..5684102 | 17..858 | 100 | -> | Plus |
| X | 5684174..5684264 | 859..949 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:01 Download gff for
BS22866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5577294..5578135 | 17..858 | 100 | -> | Plus |
| arm_X | 5578207..5578297 | 859..949 | 100 | | Plus |
BS22866.pep Sequence
Translation from 16 to 948
> BS22866.pep
MARYQSSLSLGILVVLLIDQLANAQFVPGPISGPIPRQQRSLFGSGPPPG
WSSGGLSHGWNSPSFEFSPLPPSHSSHVTKDELLALLAAWKDVAKPTTPA
PEPEPEEPEPEPEATTPAPPEDVDEPEPEPEAPAPAPAPEAPAGPPPGVP
VTVSLPALVPIQLAAMWQQPALGAAAGGLGPLNLGGLGLGGGIALNTLGG
GAVAAGGAIAAGGGGAAAAGAAAAASRSGVARPRARARIGGRASNAQQPA
IRFPVANPRSFTSNNYVAPRPRYYRDTEPMRVNVMAPPPPSPYQMANIQG
PVQLVPAYWQ*
BS22866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42449-PA | 310 | CG42449-PA | 1..310 | 1..310 | 1637 | 100 | Plus |
| CG42449-PB | 281 | CG42449-PB | 1..281 | 1..281 | 1475 | 100 | Plus |
| CG13358-PD | 301 | CG13358-PB | 10..191 | 10..197 | 230 | 34.8 | Plus |
