BS22889.complete Sequence
1754 bp assembled on 2011-02-15
GenBank Submission: KX800438
> BS22889.complete
GAAGTTATCAGTCGACATGGTCAATCCATCGCCCGCCCGAGGTGGAGAAT
CCACTGCCCCCCACATCCTCCCCAATGAGATGGAGAATGACGTGGACAAG
AGAATAGCGACGCCACCTCCAGCACCAGCCGGTAGCGATGTCATCGCCGA
TGTTGTGGGCGACTTTGGCATCTGGCAGCTGAGAACCATTCTCATCATCT
TCCTGTGCAAAATCCCTGCCGCCTGGTTCATGGCCTGCATCATCTTCACC
GGACCGGAACTTTATCCCGGCTCGGAGTTCACCTGCGACACCAGTTATTT
GACTAGCAGCAGCAACTCCAGTTTTAGTATTTCGGATAACCAGTGCTATG
TCCTGGACGAGTCCACTGGCACCAGCTCCGAGTGCGAGCAGTTCAACTAC
GTATCCAGTTTCGACTCCCTGATCATGCAGTTCAATCTGGTCTGCTTGAG
GGACATCTTCGTGGCCTGGACTCAGTACTGGCATTTGTTCGGAGTTCTTG
TAGGCGGCGTTATGGGCACCAAGATGATGCTGGGCATCAGCCCGAGGAGC
ACCTATTGTGTCGGTGCTGTAGCCCAGATTTTGTGTGGAGTAGTCACTGG
ATATGCTAGGGATTTTAGTCTGCACTGCGCCTTCCGTTGTCTCTCCGCTG
TCTGTTGTGCGATCATGTTCACAGCTGGTCAAGCCATATTTGCCGATATC
ACGGCGGGAATGCATCGCATTGGTGCCATTATCCTATACGACACTTTCTG
GTCCATTGGTGTGATTCTGTTGCCAGGACTCTCCTCGTTCTTCAACAGCT
GGTCCCTGATATATGTGGGCATCACATTCCCCACTATCATGCTGATCTTG
CTGCTCTACTGGACTCCGGATTCACCTCGCTGGCTGCTCCGGCACGCTGC
GGATCGGTTTTCCATTGACAATGTGGAACAGATCTTGCGTGAGGGAGCGG
CGATCAATGATCGCTCGTTCAAGATCCCTCCGGATTTCCGACAGCAGCTG
GAGCAACTAAGTGAGCGCTTGAAGGCCCAACCCCCACCAGCTCCTTGGAC
GGAGTTGTGGAAGGGAAAGCGGGCCAAGACCCACATGGTAGCTGCCCACT
TGGCATTGGCCTTTTTCGTCATCAACTTTATGGGGATGCTGCTCAACATA
AGATCATTTGGAAGGGACTATCTGGTACCGAACACTATTGCCATGGGATT
TTCGGAAATCATTGGCTGCTTCCTGGCGCTGCACTTTACACTCAAGCACA
ACAAGTGGAAGTGGCAATGTGCTGGGGTCTTTAATATATTAGCTGGAATC
CTCGGATGCATGGGCTGGATCTTCACCAATGCGGACTCAATGGATGCTGA
TCTAAAAGTGAGCCTCTGGATGATCATCGCCACCATTCCCAAGGCGGCTG
TTTCGTGTGCCCAATCGATGATCCTGGCCTGCATGAACGAACTGATGCCG
GCGAACAAGAAGCAGCTTTTCGTCTTCTCCGTGGTCACCTGGGCCCGAGT
GTGGCTCCTCTCAGCGCCGTTCTTCAATGTCCTACGGAAGATCGACACTG
CCATGTCGCTGACTTCGTATTGTGTATTTAGTATTCTTGGCGGAATCTGC
ACCAGCCTGCTCCTCACGCCCAGATTAAGTGTGTCCCCGGTAGTGCCACA
CTTGGAGCAGAGAAACACGAAGGAGCAGTCTCCATTGAACGCCCCAGTTT
GGACCGTCGAATCCGATGTGAACAATACTCGATTGTAGAAGCTTTCTAGA
CCAT
BS22889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4462-RA | 1722 | CG4462-PA | 1..1722 | 17..1738 | 8610 | 100 | Plus |
| CG4465-RA | 1734 | CG4465-PA | 452..527 | 408..483 | 185 | 82.9 | Plus |
| CG4465-RA | 1734 | CG4465-PA | 203..310 | 162..269 | 180 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4462-RA | 2194 | CG4462-RA | 298..2020 | 16..1738 | 8615 | 100 | Plus |
| CG4465-RA | 1917 | CG4465-RA | 513..588 | 408..483 | 185 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19923266..19923939 | 689..16 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 19922689..19923196 | 1197..690 | 2540 | 100 | Minus |
| 3R | 32079331 | 3R | 19921918..19922315 | 1738..1341 | 1990 | 100 | Minus |
| 3R | 32079331 | 3R | 19922373..19922517 | 1340..1196 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 19917252..19917327 | 483..408 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:01:59 has no hits.
BS22889.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:20:00 Download gff for
BS22889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4462-RA | 1..1722 | 17..1738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:58 Download gff for
BS22889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4462-RA | 299..2020 | 17..1738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:16 Download gff for
BS22889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4462-RA | 299..2020 | 17..1738 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:16 Download gff for
BS22889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19921918..19922315 | 1341..1738 | 100 | <- | Minus |
| 3R | 19922373..19922516 | 1197..1340 | 100 | <- | Minus |
| 3R | 19922690..19923196 | 690..1196 | 100 | <- | Minus |
| 3R | 19923266..19923938 | 17..689 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:58 Download gff for
BS22889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15747640..15748037 | 1341..1738 | 100 | <- | Minus |
| arm_3R | 15748095..15748238 | 1197..1340 | 100 | <- | Minus |
| arm_3R | 15748412..15748918 | 690..1196 | 100 | <- | Minus |
| arm_3R | 15748988..15749660 | 17..689 | 100 | | Minus |
BS22889.pep Sequence
Translation from 16 to 1737
> BS22889.pep
MVNPSPARGGESTAPHILPNEMENDVDKRIATPPPAPAGSDVIADVVGDF
GIWQLRTILIIFLCKIPAAWFMACIIFTGPELYPGSEFTCDTSYLTSSSN
SSFSISDNQCYVLDESTGTSSECEQFNYVSSFDSLIMQFNLVCLRDIFVA
WTQYWHLFGVLVGGVMGTKMMLGISPRSTYCVGAVAQILCGVVTGYARDF
SLHCAFRCLSAVCCAIMFTAGQAIFADITAGMHRIGAIILYDTFWSIGVI
LLPGLSSFFNSWSLIYVGITFPTIMLILLLYWTPDSPRWLLRHAADRFSI
DNVEQILREGAAINDRSFKIPPDFRQQLEQLSERLKAQPPPAPWTELWKG
KRAKTHMVAAHLALAFFVINFMGMLLNIRSFGRDYLVPNTIAMGFSEIIG
CFLALHFTLKHNKWKWQCAGVFNILAGILGCMGWIFTNADSMDADLKVSL
WMIIATIPKAAVSCAQSMILACMNELMPANKKQLFVFSVVTWARVWLLSA
PFFNVLRKIDTAMSLTSYCVFSILGGICTSLLLTPRLSVSPVVPHLEQRN
TKEQSPLNAPVWTVESDVNNTRL*
BS22889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4462-PA | 573 | CG4462-PA | 1..573 | 1..573 | 3038 | 100 | Plus |
| CG4465-PA | 577 | CG4465-PA | 46..563 | 15..542 | 1338 | 48 | Plus |
| CG44098-PB | 612 | CG44098-PB | 6..536 | 41..536 | 1070 | 40.4 | Plus |
| CG44098-PD | 775 | CG44098-PD | 169..699 | 41..536 | 1070 | 40.4 | Plus |
| CG44098-PC | 813 | CG44098-PC | 207..737 | 41..536 | 1070 | 40.4 | Plus |
