Clone BS22893 Report

Search the DGRC for BS22893

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:228
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptRpL13-RA
Protein status:BS22893.pep: full length peptide match
Sequenced Size:689

Clone Sequence Records

BS22893.complete Sequence

689 bp assembled on 2011-01-25

GenBank Submission: KX801702

> BS22893.complete
GAAGTTATCAGTCGACATGGGTAAGGGTAACAATATGATTCCGAATCAGC
ACTACCACAAGTGGTGGCAGCGGCATGTGAAGACCTGGTTCAACCAGCCG
GCCCGCAAGGTCCGCAGGCATGCGAACCGCGTCAAGAAGGCTAAGGCCGT
CTTCCCCCGCCCAGCCAGCGGTGCCCTGCGCCCTGTGGTTCGCTGCCCCA
CCATCCGCTACCACACCAAGCTGCGTGCCGGCCGTGGTTTCACCCTGGAG
GAGCTGAAGGGTGCCGGCATTGGCGCCAACTTCGCCAAGACCATCGGCAT
TGCCGTCGACAGGAGGCGCAAGAACAAATCCCTGGAGTCCCGCCAGCGTA
ACATCCAGCGCCTCAAGGAGTACCGCAGCAAGTTGATCCTGTTCCCCATC
AACGAGAAGAAGATCCGCGCCGGCGAGTCCTCTCTGGAGGAGTGCAAGCT
GGCTACCCAGCTTAAGGGACCCGTCCTGCCCATCAAAAATGAGCAGCCCG
CCGTGGTCGAGTTCCGTGAGGTGACCAAGGATGAGAAGAAGTTCAAGGCC
TTCGCCACGCTGCGCAAGGCTCGCACTGATGCCCGTTTGGTCGGAATCCG
CGCCAAGCGCGCCAAGGAGGCCGCTGAGAGCGAGGACGCCGCCAAGGGAG
ACCCCAAGAAAGCCAAGAAGTAAAAGCTTTCTAGACCAT

BS22893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13-RC 657 CG4651-PC 1..657 17..673 3270 99.8 Plus
RpL13-RB 657 CG4651-PB 1..657 17..673 3270 99.8 Plus
RpL13-RA 657 CG4651-PA 1..657 17..673 3270 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13-RC 1186 CG4651-RC 306..963 17..674 3275 99.8 Plus
RpL13-RB 774 CG4651-RB 48..705 17..674 3275 99.8 Plus
RpL13-RA 791 CG4651-RA 65..722 17..674 3275 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9967937..9968248 258..569 1560 100 Plus
2L 23513712 2L 9967635..9967878 17..260 1220 100 Plus
2L 23513712 2L 9968315..9968422 567..674 525 99.1 Plus
Blast to na_te.dros performed on 2014-11-26 16:25:09 has no hits.

BS22893.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:14:56 Download gff for BS22893.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13-RB 48..702 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:11 Download gff for BS22893.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13-RA 65..719 17..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:53 Download gff for BS22893.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13-RA 65..719 17..671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:53 Download gff for BS22893.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9967939..9968247 260..568 100 -> Plus
2L 9968317..9968419 569..671 99   Plus
2L 9967635..9967877 17..259 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:11 Download gff for BS22893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9967635..9967877 17..259 100 -> Plus
arm_2L 9967939..9968247 260..568 100 -> Plus
arm_2L 9968317..9968419 569..671 99   Plus

BS22893.pep Sequence

Translation from 16 to 672

> BS22893.pep
MGKGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPA
SGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRR
RKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLK
GPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIRAKRAK
EAAESEDAAKGDPKKAKK*

BS22893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13-PC 218 CG4651-PC 1..218 1..218 1126 100 Plus
RpL13-PB 218 CG4651-PB 1..218 1..218 1126 100 Plus
RpL13-PA 218 CG4651-PA 1..218 1..218 1126 100 Plus