BS22929.complete Sequence
2075 bp assembled on 2011-02-15
GenBank Submission: KX804157
> BS22929.complete
GAAGTTATCAGTCGACATGGCGACTGTGGCGGAGGGCAGCAAAATGCTCG
AGGCAGCATTACAGCAAATGGACGGCCTTATATCGAGTACCGCGACACAG
GCGGGATCCGTTTCTATATCCGGAGCAGGGTCTTCCCTGACACTCAGCGA
ACGCAACTTAATTTCGGCCACTAATGTTTTGTCAACAGCTAAGACTTTGG
CTCTCGCCCTGCAACAGGTCGGACTGGCTGCTCCAGCACCGGATCCTGTC
ACGGCGGCCATTATCAGCGACTGGCTGGAGACGCACATACCTCGTCAGGA
TTCCGACGAGCGTATGCGTCGCCTGCAACGGGATAAGGAGGGCTTAGCCC
TGCAGTATCAGATGCTGGCGGAACGAGTGTCAGAACAAGCGGACAAGATT
ATCGAGCTGGAGGGTCTGATAACGGAAAAGAGCCAGCAGTTGTGTACCAA
GGAAGAGCAACTGCAACGACAGATGATTTCTAGTTCCGCCCTCGAGACGC
AAAAGCTGGAGCTAATGAGTGCCTTAAGTGAACTAAAACTGCACCGTACT
GCATTAGAGCAGGCTAACGATGGAGGTAGCGCCATTTCCGCCAATATTCC
TTACGGCAGTTTGAGCAACATTAATCAGAAGGCCTTTATGGGATCGCCCA
AGACACCGCCCTCTGCACTGCGGCACCAAATCAAACCGCAGTTCCACAGC
CTGCCAAGATCGCATGGCAAGTTTGTGAACAACAATAACAATCGTGCCTT
AGACGTCAATGCCAACAGCAGCGGCAAGCAGCGAAACGTGGCCTTTGCTT
CGAACGAACACATTTTGATTGATGACAATCATCATCAAGCGGAGGATGCA
ATGACTTCCAGCTTTATGTCGCAGTTTACACCCTCACCAAAGCTGAGGGA
AAGATCTGCCCGTGGCTTGCGCAACATACTTGGTAAGCTACGACGCAGCA
ACAGCAGCAACTGCGAGCTGACCGCCTTGGAGCAGGCAGAGCCCGAGTTT
CGACGAGGAGGAGCCCGAGCTACGGCAGGCGGTCGAATTGAGTGGAGTGC
TCAGACTCCGTTGTTCGGTGAGAATGAAAAACATTGGACAACCTGGGGAG
CGCAGGAGGTGTGCAATTGGTTGGCATACATGGGTCTAGGCTGCTATGAG
GACAATTGCCGAAAGTGGTTGAATGCCAATCCATCAGTGTCGTTCTTCAC
CGCCTCGCCTGTCGACATCGAACGAGAGCTAAACCTAAAGATGCCACTTC
ATCGGAAAAAAATCTTGTTGGCCATCGACGACCTAACTGGGAAGGAGTTT
GATGACCTGACACTGAAGGCATCCAGCTTGGATGTGACATGGGTTCTACG
CTGGCTGGATGACATCGGCTTGCCACAGTATAAAGATTACTTTATGCAGG
CCAAGATTGACGGTCGAATGCTGCATCGTCTCACCCTCGAGGACCTCTCC
CAATTGCACGTCAGCTCTTGTTTGCACATAGCCTCCTTGCGAGCGGGAAT
CTTATGCATGCGCCGCTTATCGTGGAACGCGGAAGGTCTAATTCGACGCT
CCATTAAAGTTGTCAGTGAAGATGAAGCCGCAGCCACTCCCGACAGAGAC
AATGTGGAGCTGTGGACAGCGCATCGCATTATGGGATGGCTGCAGACCAT
CGACCTGTCTGAATACACGCCCAATCTGCGTGGTGCTGGTGTCCACGGGG
CTCTGATGCTTTATGAACCGCGTTTCAATGCTGACTTGCTTGCCGACCTG
CTGTCGATACCACCGAGCAAGTCCCTGCTGCGTCGCCACCTGGCCATGCA
CTTTAAGGAGCTAGTCGGTCGGCCAGTGATCTTGAGTAAGCGAGATGCCG
AATCGGCACCCGGGTACCAACCGCTAAGCATTACAGCTAAGCTGAAGCCG
GTGAAACGCACACAGTTTTCGTTAAAGCGTCGCAAGAGCTCGAAGAGCCA
GAGTGACGTAGACTGGACGGAGTACGTGTGTCCCATGAATGCCAGTGTGC
CGGAGACATATCTAGCTGATACGGCTAAGGAGCATGAGAGCTCCATGAGT
TCGAACTAAAAGCTTTCTAGACCAT
BS22929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Liprin-beta-RC | 2043 | CG10743-PC | 1..2043 | 17..2059 | 10215 | 100 | Plus |
| Liprin-beta-RA | 2043 | CG10743-PA | 1..2043 | 17..2059 | 10215 | 100 | Plus |
| Liprin-beta-RB | 2043 | CG10743-PB | 1..2043 | 17..2059 | 10215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Liprin-beta-RC | 2723 | CG10743-RC | 164..2208 | 16..2060 | 10225 | 100 | Plus |
| Liprin-beta-RA | 2787 | CG10743-RA | 228..2272 | 16..2060 | 10225 | 100 | Plus |
| Liprin-beta-RB | 2813 | CG10743-RB | 254..2298 | 16..2060 | 10225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13513856..13514801 | 216..1161 | 4730 | 100 | Plus |
| 3L | 28110227 | 3L | 13514862..13515761 | 1161..2060 | 4500 | 100 | Plus |
| 3L | 28110227 | 3L | 13513591..13513794 | 16..219 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:05:44 has no hits.
BS22929.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:49 Download gff for
BS22929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10743-RA | 234..2274 | 17..2057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:12 Download gff for
BS22929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-beta-RB | 255..2295 | 17..2057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:16 Download gff for
BS22929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-beta-RB | 255..2295 | 17..2057 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:16 Download gff for
BS22929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13513592..13513792 | 17..217 | 100 | -> | Plus |
| 3L | 13513858..13514801 | 218..1161 | 100 | -> | Plus |
| 3L | 13514863..13515758 | 1162..2057 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:12 Download gff for
BS22929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13506692..13506892 | 17..217 | 100 | -> | Plus |
| arm_3L | 13506958..13507901 | 218..1161 | 100 | -> | Plus |
| arm_3L | 13507963..13508858 | 1162..2057 | 100 | | Plus |
BS22929.pep Sequence
Translation from 16 to 2058
> BS22929.pep
MATVAEGSKMLEAALQQMDGLISSTATQAGSVSISGAGSSLTLSERNLIS
ATNVLSTAKTLALALQQVGLAAPAPDPVTAAIISDWLETHIPRQDSDERM
RRLQRDKEGLALQYQMLAERVSEQADKIIELEGLITEKSQQLCTKEEQLQ
RQMISSSALETQKLELMSALSELKLHRTALEQANDGGSAISANIPYGSLS
NINQKAFMGSPKTPPSALRHQIKPQFHSLPRSHGKFVNNNNNRALDVNAN
SSGKQRNVAFASNEHILIDDNHHQAEDAMTSSFMSQFTPSPKLRERSARG
LRNILGKLRRSNSSNCELTALEQAEPEFRRGGARATAGGRIEWSAQTPLF
GENEKHWTTWGAQEVCNWLAYMGLGCYEDNCRKWLNANPSVSFFTASPVD
IERELNLKMPLHRKKILLAIDDLTGKEFDDLTLKASSLDVTWVLRWLDDI
GLPQYKDYFMQAKIDGRMLHRLTLEDLSQLHVSSCLHIASLRAGILCMRR
LSWNAEGLIRRSIKVVSEDEAAATPDRDNVELWTAHRIMGWLQTIDLSEY
TPNLRGAGVHGALMLYEPRFNADLLADLLSIPPSKSLLRRHLAMHFKELV
GRPVILSKRDAESAPGYQPLSITAKLKPVKRTQFSLKRRKSSKSQSDVDW
TEYVCPMNASVPETYLADTAKEHESSMSSN*
BS22929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Liprin-beta-PC | 680 | CG10743-PC | 1..680 | 1..680 | 3479 | 100 | Plus |
| Liprin-beta-PA | 680 | CG10743-PA | 1..680 | 1..680 | 3479 | 100 | Plus |
| Liprin-beta-PB | 680 | CG10743-PB | 1..680 | 1..680 | 3479 | 100 | Plus |
| Liprin-gamma-PD | 852 | CG11206-PD | 592..824 | 360..600 | 370 | 36.9 | Plus |
| Liprin-gamma-PB | 1023 | CG11206-PB | 592..824 | 360..600 | 370 | 36.9 | Plus |
