BS22933.complete Sequence
3284 bp assembled on 2011-02-16
GenBank Submission: KX805533
> BS22933.complete
GAAGTTATCAGTCGACATGTCGAGCTTTGTGCTGGACAAGGAGGCGTTCG
TGCGCCGCGTGAAACGCCTCTACACGGAATGGAGGGCTCCCAGCATCGGA
CACGATGACGCGCTCAGGAATCTGGACTGCATCATGAGCATCGTGGGCGT
CGAAGAGGATGTCATGTACTCCAAGTCCATGGCCCTGCAGCTCTGGCTGC
TGGGCTACGAGCTGACGGACACCATCTCAGTGTTTTGCTCGGATGCCGTG
TATTTTCTCACTAGCAAAAAGAAAATAGAATTCCTGAAGCAGACGCAGAA
CATCACCGAAGAAGGTTTTCCGGAAATCAATCTGCTTGTTAGGGATCGGA
CGGACAAGGACCAGGGCAACTTCGAGAAGCTCATCAAAGCCCTGCAAAAC
TCGAAGAAGGGCAAGCGTTTGGGCGTCTTCGCCAAGGACGCCTATCCCGG
GGAGTTCAGCGAAGCATGGAAGAAATCCCTGACGGCGTCCAAGTTCGAGC
ATGTGGACATTAGCACTATTATCGCCTACCTCATGTGTCCCAAGGATGAG
TCGGAGATCAACAACATACGCAAGGCATCGCTAGTGTCAATGGACATTTT
CAACAAGTATTTGAAAGATGAGATCATGGACATTATTGATTCGGATAGGA
AAGTCAAACACAACAAGCTCTCAGATGGCTGCGAGGCTGCCATTGGCGAG
AAGAAGTACACCAGTGGTCTGGATCCCAGACTCCTCGATATGGCCTACCC
ACCCATCATCCAATCGGGAGGAGCCTACAGCCTGAAGTTCTCCGCGGTGG
CGGACAAAAATCCCTTGCACTTCGGTGTGATTGTGTGCTCCTTGGGCGCC
CGCTACAAGTCGTATTGCTCAAATATATCGCGCACCTTTCTGGTGAATCC
CACCGAGGCCATGCAGGAGAACTACACATTTCTGGTAAGTGTGCAGGAGG
AGATTCTCAAGCTGCTGGTTCCGGGCACAAAGCTGTGCGACGTCTACGAA
AAGACCCTGGACTTCGTGAAGAAGGAGAAGCCGAGTATGGTGGACAATCT
GCCCAAAAGCTTTGGTTTCGCCATGGGCCTAGAGTTCCGGGAGAACTCCA
TTGTCATCGGACCCAAATGCCAGGCGCTACTCAAGAAGAATATGGTCTTT
AATTTGCACGTGGGCATCTCGAATCTGACCAATCCCGAAGCCACCGACAA
AGAGGGCAAGAACTACGCCCTCTTCATCGGAGACACTGTGCTAGTAGGCG
AACAATCCCCAGCCAGTGTGATGACTCCGTCCAAGAAGAAGATCAAGAAC
GTCGGCATCTTTATCAAGGACGACAGCGACGAGGAAGATGTGGACGACAA
GAAGACCGCTAAAGAAGATCAGGGCACCGAGATCCTGGGCCGCAGCAAGC
GCAACGCGGTGCTGGAGTCAAAGCTGCGAAACGAGATCAACACGGAGGAA
AAGCGCAAGGAGCACCAGCGCGAGCTGGCTCAGCAGCTGAACGAGCGCGC
CAAGGATCGGCTGGCCAGGCAGGGAAACTCGAAGGAGGTCGAGAAAGTGC
GCAAGAACACCGTCTCCTACAAGTCCATCAGCCAAATGCCGCGCGAGCCG
GAAGTCAAGGAGCTCAAGCTTTACGTGGATAAGAAGTACGAGACCGTCAT
CATGCCAGTGTTCGGCATCCAGGTGCCGTTCCATATATCCACCATCAAGA
ACATCTCGCAGTCGGTGGAGGGCGAGTACACGTACTTGCGTATCAACTTC
TTTCATCCCGGCGCCACAATGGGTCGCAACGAAGGCGGACTCTATCCTCA
GCCAGAGGCCACATTTGTCAAGGAAGTTACATACCGCAGCTCTAATGTTA
AGGAACACGGGGAGGTGGGAGCTCCATCCGCAAATCTAAACAATGCTTTC
CGGCTGATCAAGGAGGTGCAGAAGCGCTTCAAGACCCGCGAGGCTGAGGA
GCGCGAAAAGGAGGATCTTGTGAAGCAAGACACACTCATTCTGTCCCAGA
ACAAGGGTAATCCCAAGCTGAAGGACCTATACATTCGGCCCAACATCGTG
ACCAAGCGCATGACGGGCAGCCTGGAAGCGCACAGCAATGGATTCCGCTA
CATCTCCGTGCGCGGCGACAAGGTGGACATCTTGTACAACAACATCAAAA
GCGCGTTTTTCCAGCCCTGCGATGGCGAGATGATCATTCTTCTGCATTTC
CACCTGAAGTACGCCATTATGTTTGGCAAAAAGAAGCACGTGGATGTACA
GTTCTACACGGAAGTGGGAGAGATCACCACGGATCTGGGCAAGCACCAGC
ACATGCACGACCGCGACGACTTGGCTGCTGAGCAGGCAGAACGTGAGCTG
CGGCACAAGCTCAAGACTGCCTTCAAGAGCTTCTGCGAGAAGGTGGAAAC
CATGACCAAGTCGGTAGTGGAGTTCGACACGCCGTTCCGTGAGTTGGGAT
TCCCTGGAGCACCCTTCCGCAGCACGGTGACGCTGCAACCCACCTCGGGC
TCCTTGGTCAATCTGACGGAATGGCCACCATTTGTCATCACGCTGGACGA
TGTGGAGTTGGTGCACTTCGAGCGCGTTCAGTTCCACTTGCGCAACTTCG
ATATGATATTTGTGTTCAAGGAGTACAACAAGAAGGTGGCCATGGTGAAC
GCCATTCCTATGAACATGCTGGATCACGTGAAGGAGTGGCTCAACTCCTG
CGACATCCGCTATTCGGAGGGTGTTCAATCCTTGAACTGGCAAAAGATCA
TGAAGACCATCACCGACGATCCTGAGGGATTCTTTGAACAAGGCGGCTGG
ACATTCTTGGACCCGGAATCGGGCAGCGAAGGCGAAAACGAAACCGCCGA
GTCCGAAGAGGACGAGGCCTACAATCCCACCGACGCTGAATCGGATGAGG
AGTCGGACGAAGATTCCGAGTACTCAGAGGCATCAGAAGACAGCGAGGAA
AGCGATGAGGACCTTGGCTCTGATGAGGAATCTGGCAAGGATTGGTCCGA
TCTGGAGCGCGAGGCTGCTGAGGAAGACCGCAACCACGATTATGCCGCAG
ATGACAAACCACGCAACGGCAAATTCGATTCGAAGAAGCACGGCAAGAGT
TCAAAGCACAGCCCGTCGAAGTCGTCGAAGGACAAGTACAACAGCCGGGA
CAAGCATCATTCCTCCTCATCGTCCGGAAACAAGAGCAGCAGCAAGGACA
AGGATCGCAAGCGCTCGCGGGATGACAGTCGCGACAATGGGCACAAGTCG
AAGAAGTCGCGACATTAGAAGCTTTCTAGACCAT
BS22933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dre4-RB | 3252 | CG1828-PB | 1..3252 | 17..3268 | 16155 | 99.8 | Plus |
| dre4-RA | 3369 | CG1828-PA | 1..3095 | 17..3111 | 15370 | 99.8 | Plus |
| dre4-RA | 3369 | CG1828-PA | 3211..3369 | 3110..3268 | 795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dre4-RB | 3573 | CG1828-RB | 135..3386 | 17..3268 | 16155 | 99.8 | Plus |
| dre4-RA | 3690 | CG1828-RA | 135..3229 | 17..3111 | 15370 | 99.8 | Plus |
| dre4-RA | 3690 | CG1828-RA | 3345..3503 | 3110..3268 | 795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1874041..1875219 | 1827..649 | 5880 | 99.9 | Minus |
| 3L | 28110227 | 3L | 1873117..1873983 | 2694..1828 | 4290 | 99.7 | Minus |
| 3L | 28110227 | 3L | 1875287..1875587 | 649..349 | 1505 | 100 | Minus |
| 3L | 28110227 | 3L | 1875652..1875916 | 349..85 | 1325 | 100 | Minus |
| 3L | 28110227 | 3L | 1872800..1873062 | 2957..2695 | 1270 | 98.9 | Minus |
| 3L | 28110227 | 3L | 1871761..1871919 | 3268..3110 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 1872582..1872736 | 3111..2957 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 1876109..1876178 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:07:41 has no hits.
BS22933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:02 Download gff for
BS22933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dre4-RB | 159..3410 | 17..3268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:05 Download gff for
BS22933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dre4-RB | 135..3386 | 17..3268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:41 Download gff for
BS22933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dre4-RB | 135..3386 | 17..3268 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:41 Download gff for
BS22933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1871761..1871917 | 3112..3268 | 100 | <- | Minus |
| 3L | 1872582..1872735 | 2958..3111 | 100 | <- | Minus |
| 3L | 1872800..1873062 | 2695..2957 | 98 | <- | Minus |
| 3L | 1873117..1873983 | 1828..2694 | 99 | <- | Minus |
| 3L | 1874041..1875218 | 650..1827 | 99 | <- | Minus |
| 3L | 1875287..1875586 | 350..649 | 100 | <- | Minus |
| 3L | 1875652..1875915 | 86..349 | 100 | <- | Minus |
| 3L | 1876110..1876178 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:05 Download gff for
BS22933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1871761..1871917 | 3112..3268 | 100 | <- | Minus |
| arm_3L | 1872582..1872735 | 2958..3111 | 100 | <- | Minus |
| arm_3L | 1872800..1873062 | 2695..2957 | 98 | <- | Minus |
| arm_3L | 1873117..1873983 | 1828..2694 | 99 | <- | Minus |
| arm_3L | 1874041..1875218 | 650..1827 | 99 | <- | Minus |
| arm_3L | 1875287..1875586 | 350..649 | 100 | <- | Minus |
| arm_3L | 1875652..1875915 | 86..349 | 100 | <- | Minus |
| arm_3L | 1876110..1876178 | 17..85 | 100 | | Minus |
BS22933.pep Sequence
Translation from 16 to 3267
> BS22933.pep
MSSFVLDKEAFVRRVKRLYTEWRAPSIGHDDALRNLDCIMSIVGVEEDVM
YSKSMALQLWLLGYELTDTISVFCSDAVYFLTSKKKIEFLKQTQNITEEG
FPEINLLVRDRTDKDQGNFEKLIKALQNSKKGKRLGVFAKDAYPGEFSEA
WKKSLTASKFEHVDISTIIAYLMCPKDESEINNIRKASLVSMDIFNKYLK
DEIMDIIDSDRKVKHNKLSDGCEAAIGEKKYTSGLDPRLLDMAYPPIIQS
GGAYSLKFSAVADKNPLHFGVIVCSLGARYKSYCSNISRTFLVNPTEAMQ
ENYTFLVSVQEEILKLLVPGTKLCDVYEKTLDFVKKEKPSMVDNLPKSFG
FAMGLEFRENSIVIGPKCQALLKKNMVFNLHVGISNLTNPEATDKEGKNY
ALFIGDTVLVGEQSPASVMTPSKKKIKNVGIFIKDDSDEEDVDDKKTAKE
DQGTEILGRSKRNAVLESKLRNEINTEEKRKEHQRELAQQLNERAKDRLA
RQGNSKEVEKVRKNTVSYKSISQMPREPEVKELKLYVDKKYETVIMPVFG
IQVPFHISTIKNISQSVEGEYTYLRINFFHPGATMGRNEGGLYPQPEATF
VKEVTYRSSNVKEHGEVGAPSANLNNAFRLIKEVQKRFKTREAEEREKED
LVKQDTLILSQNKGNPKLKDLYIRPNIVTKRMTGSLEAHSNGFRYISVRG
DKVDILYNNIKSAFFQPCDGEMIILLHFHLKYAIMFGKKKHVDVQFYTEV
GEITTDLGKHQHMHDRDDLAAEQAERELRHKLKTAFKSFCEKVETMTKSV
VEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVH
FERVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWLNSCDIRYS
EGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGENETAESEEDE
AYNPTDAESDEESDEDSEYSEASEDSEESDEDLGSDEESGKDWSDLEREA
AEEDRNHDYAADDKPRNGKFDSKKHGKSSKHSPSKSSKDKYNSRDKHHSS
SSSGNKSSSKDKDRKRSRDDSRDNGHKSKKSRH*
BS22933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dre4-PB | 1083 | CG1828-PB | 1..1083 | 1..1083 | 5622 | 100 | Plus |
| dre4-PA | 1122 | CG1828-PA | 1..1122 | 1..1083 | 5572 | 96.5 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 777..941 | 932..1083 | 174 | 25.5 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 777..941 | 932..1083 | 174 | 25.5 | Plus |
| PNUTS-PA | 628 | CG33526-PA | 215..386 | 913..1081 | 166 | 29.7 | Plus |
