BS22934.complete Sequence
2903 bp assembled on 2011-02-16
GenBank Submission: KX805267
> BS22934.complete
GAAGTTATCAGTCGACATGGAGAACGTGCGCTTTTCAATTATTGAAAACG
ACTTGAAGTGGAACTCGGAAAGCGATCCGACGGCGGATGTAGACTTGCTC
TTGGACAAGCGGAGCATATCCAGTGAGGCCAACAGCGCCGGAGTTTTTAG
CGACGAGGCGCACGAGATATTTGCGCGCCAACAGCAGAACCAGATCCTCT
GGGACCTCGACGAGGTTAAGGAAACCCTGACCGAGTCTCCAGGCGGAAAG
CATGTCGTGGACATGGTTCAATCTGGCTGTTTCCTGGAACTAATGACCGA
CTCTGCTGACTGCAATCTGGCGCTGATCTGCTGCTCGGTATTCGGGAGCG
TAGAGAATACTCTCTTCCTACTAAAACACTACAACGCGGATCCGAATGTG
GCGGACAGTCGGGGTCGGACCCCACTGCATTTCGCCTGCTGTCGGGCAAA
CGCTCCCATAGCTAAGGTTCTCCTCGACTTCGGCGCTGACCCCAATCGCT
GGGATGCCAGGAAGGAGGTCACGTCGCTGCACTGTGCGGCCAGCTCAAAA
AGCGTTGAATGCATCCTGCTGTTGCTGCGGCGAAAAGCGAGCATCAACAT
TGGGATCGAAAAGCGTTCCGCTCTGCACTATGCCATCGATGTGAATGCCG
TGGATTGCGTTGAGATCCTGCTGAAGTACGGAGCCGACCCAAACACACCG
CAGGTGTACACTGAAACTCCACTGCACACCGCCAGCGCCGCAGGATTCGC
CAAATGCGTCCAGCTTCTTCTCAGTCACAACGCCGACGTGCGATCGCAGT
TTGGCGAGGGAAAGGTTACGGCCCTGCACTTGGCTGCCGAAAACGACTAT
GTAGAATGTGCTCGCTTGCTCCTGGAACACCGTGCTGAGGTGGACTGCCG
TAACGCCAGCCATCAAACGCCCTTGCACCTCGCCTGCCTTTCGCAGTCAA
TCGGCACCGTGGATTTACTGATATCTTACGGAGCCAATGTGAATGCCGTT
TACCGAGATGGTAGAACCGCGTTGCACGCCGCCATCGTTAAGCAGTCGCG
GAGTTTGGACTGCTGCAATGCCTTGCTAAAGGCGGGAGCGGATGTTAACA
AGGCAGACAACTATGGATATACACCACTGCACATTGCAGCACTGAATGAA
TTCAGCAGTTGTGTGTACACGTTCATAGAACACGGGGCGGATATTACCGC
CAGGACGGACGGGCGTGTATCGGCACTATCATTTATAGTAAGGCGCACTC
CTGAGATTATACCCAAATTAATGCAAAAGCTGGACTCTTCGATAAAGGCG
AACGACCAGGAAATCGGCGACGTTGACTGTCAGATAAAGCTAGACTTCCG
GCTTTTGGTACCCAGTTCCTCGATGGATCGGGGAGAAACCGAGCTACTAC
TTTCCCTTATAGAAGTGGGACAGAAGCGCATTCTCATGCACCCGCTTTGC
GAAACTTTCCTCTTTCTTAAGTGGCGTCGCATTCGGAAATTCTTCCTTAT
GAGCCTTGCGTATCATACGCTTTTCGTGATCCTTTTCACTTTCTATGTAA
TTTGGGTGTATGTCCGCTGCTGCAAGAAGGAGGAGTTGTGCGTGGCTCCA
GGTTACGTTTCAACTATTGGATATCTGGTGATCATACTAAACCTCATTCT
GCTGGGGAAAGAGGTCTTTCAAATGGCACACGGACTTCGTGGCTACGCAA
AATATTGGGAGAACTGGCTGCAATGGACCATTGGAACCGGTGTGCTCCTA
TGTGTAACACCGGAGACCGTGCGAACTGACGATTTAACGGCAGTGCCGGT
GTGGCAACATCACGTGGCAGCTATAGTGATATTGCTCGTCTGGCTGGAAC
TAATGATGTTGGTGGGACGATTCCCCATATTTGGCGTATATGTTCAAATG
TTCACAAAGGTGGCCGTTAACTTTGCGAAATTCTTGCTTGCCTACATATG
CCTGCTGGTGGCTTTTGGCCTCAGCTTTGCCGTGCTCTTCAATGATTATC
CTGCCTTTGAGAACATCACATGGTCCTTTTTGAAGTCCATCACGATGATG
TCTGGGGAACTGGAGTTTGAAGACATATTCTATGGGGACTATGCCGTCAA
ATTCCCTGTCACCGCTCACATCATATTTCTCTCCTTCGTGCTTCTTGTTA
CGGTAATTTTAACCAATCTCATGGTGGGATTGGCCGTAAGCGACATACAA
GGATTGCAAGTGAGCGCCACGCTCGATCGTCTCGTGCGCCAAGCGGAGCT
GGTGTCACGCTTGGAAAGCCTATTTTTCTCCCGCCTACTGCGAAGTGCGC
CCACTAACCTCATTCAGCTGTGTAAGAGGAGTGCTCTTTTGCGCACGTCC
CGGGACAAACTTCAGTTCACTATACGGCCCAACGACCCCCGGGACAATCA
GTTGCCTGAGGATATTAAGTTAAATGTCTATAAGCTAGTGGCTGAACGGC
GCGACAGAAACCAGAGCCTCCGACGGCGCCAGTTCGAAAACAACTACAAC
ATTTTCAGCCGCAGTCTACAGCGTCAGCAGCAGCCGCTCCACACGGATTT
CCTCAAGCCAGAACCTGCCACGGGGACCACAAAGAAGACTCCACAGAATT
TATTTCACATGCACGAGCTTTTGCGCCCCCGATCCGCTACAAATGTGCCG
CAGCAGTTCCGCCAGGAGGCGGAGGGAACAGTACAGATGAAGAATCAGGC
TAATGTCCTAAGCGCAGTGCTCGCCGAGGTGCAGGCGATCAAGACGCAAC
TGGTGGACCTAGTGGCCAAGTTCGAGCGTTTCTCAGAAAACGCAACCCGC
AAGCTGAACTACAGTACCGACGAGTTGTGCCGGCTGCGGCAGCAGGGTCA
GTCTGTGGCCTCCAGCCACATCCGTCGCCACCGCTAAAAGCTTTCTAGAC
CAT
BS22934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RA | 2871 | CG17142-PA | 1..2871 | 17..2887 | 14355 | 100 | Plus |
| pyx-RB | 1617 | CG17142-PB | 1..1617 | 1271..2887 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RA | 3966 | CG17142-RA | 459..3329 | 17..2887 | 14355 | 100 | Plus |
| pyx-RB | 2502 | CG17142-RB | 81..1865 | 1103..2887 | 8925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 218669..219646 | 2887..1910 | 4890 | 100 | Minus |
| 3L | 28110227 | 3L | 219713..220446 | 1910..1177 | 3670 | 100 | Minus |
| 3L | 28110227 | 3L | 221589..221880 | 833..542 | 1460 | 100 | Minus |
| 3L | 28110227 | 3L | 221255..221525 | 1103..833 | 1355 | 100 | Minus |
| 3L | 28110227 | 3L | 221961..222217 | 543..287 | 1285 | 100 | Minus |
| 3L | 28110227 | 3L | 222270..222513 | 287..44 | 1220 | 100 | Minus |
| 3L | 28110227 | 3L | 220507..220584 | 1178..1101 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:08:54 has no hits.
BS22934.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:04 Download gff for
BS22934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 459..3327 | 17..2885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:48 Download gff for
BS22934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 459..3327 | 17..2885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:12 Download gff for
BS22934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 459..3327 | 17..2885 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:12 Download gff for
BS22934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 221961..222216 | 288..543 | 100 | <- | Minus |
| 3L | 222270..222513 | 44..287 | 100 | <- | Minus |
| 3L | 222585..222611 | 17..43 | 100 | | Minus |
| 3L | 218671..219645 | 1911..2885 | 100 | <- | Minus |
| 3L | 219713..220444 | 1179..1910 | 100 | <- | Minus |
| 3L | 220507..220582 | 1103..1178 | 100 | <- | Minus |
| 3L | 221256..221524 | 834..1102 | 100 | <- | Minus |
| 3L | 221589..221878 | 544..833 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:48 Download gff for
BS22934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 221961..222216 | 288..543 | 100 | <- | Minus |
| arm_3L | 222270..222513 | 44..287 | 100 | <- | Minus |
| arm_3L | 222585..222611 | 17..43 | 100 | | Minus |
| arm_3L | 218671..219645 | 1911..2885 | 100 | <- | Minus |
| arm_3L | 219713..220444 | 1179..1910 | 100 | <- | Minus |
| arm_3L | 220507..220582 | 1103..1178 | 100 | <- | Minus |
| arm_3L | 221256..221524 | 834..1102 | 100 | <- | Minus |
| arm_3L | 221589..221878 | 544..833 | 100 | <- | Minus |
BS22934.pep Sequence
Translation from 16 to 2886
> BS22934.pep
MENVRFSIIENDLKWNSESDPTADVDLLLDKRSISSEANSAGVFSDEAHE
IFARQQQNQILWDLDEVKETLTESPGGKHVVDMVQSGCFLELMTDSADCN
LALICCSVFGSVENTLFLLKHYNADPNVADSRGRTPLHFACCRANAPIAK
VLLDFGADPNRWDARKEVTSLHCAASSKSVECILLLLRRKASINIGIEKR
SALHYAIDVNAVDCVEILLKYGADPNTPQVYTETPLHTASAAGFAKCVQL
LLSHNADVRSQFGEGKVTALHLAAENDYVECARLLLEHRAEVDCRNASHQ
TPLHLACLSQSIGTVDLLISYGANVNAVYRDGRTALHAAIVKQSRSLDCC
NALLKAGADVNKADNYGYTPLHIAALNEFSSCVYTFIEHGADITARTDGR
VSALSFIVRRTPEIIPKLMQKLDSSIKANDQEIGDVDCQIKLDFRLLVPS
SSMDRGETELLLSLIEVGQKRILMHPLCETFLFLKWRRIRKFFLMSLAYH
TLFVILFTFYVIWVYVRCCKKEELCVAPGYVSTIGYLVIILNLILLGKEV
FQMAHGLRGYAKYWENWLQWTIGTGVLLCVTPETVRTDDLTAVPVWQHHV
AAIVILLVWLELMMLVGRFPIFGVYVQMFTKVAVNFAKFLLAYICLLVAF
GLSFAVLFNDYPAFENITWSFLKSITMMSGELEFEDIFYGDYAVKFPVTA
HIIFLSFVLLVTVILTNLMVGLAVSDIQGLQVSATLDRLVRQAELVSRLE
SLFFSRLLRSAPTNLIQLCKRSALLRTSRDKLQFTIRPNDPRDNQLPEDI
KLNVYKLVAERRDRNQSLRRRQFENNYNIFSRSLQRQQQPLHTDFLKPEP
ATGTTKKTPQNLFHMHELLRPRSATNVPQQFRQEAEGTVQMKNQANVLSA
VLAEVQAIKTQLVDLVAKFERFSENATRKLNYSTDELCRLRQQGQSVASS
HIRRHR*
BS22934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-PA | 956 | CG17142-PA | 1..956 | 1..956 | 4921 | 100 | Plus |
| pyx-PB | 538 | CG17142-PB | 1..538 | 419..956 | 2754 | 100 | Plus |
| wtrw-PD | 969 | CG31284-PD | 157..884 | 124..827 | 977 | 33.7 | Plus |
| wtrw-PC | 986 | CG31284-PC | 174..901 | 124..827 | 977 | 33.7 | Plus |
| wtrw-PB | 986 | CG31284-PB | 174..901 | 124..827 | 977 | 33.7 | Plus |
| wtrw-PD | 969 | CG31284-PD | 217..461 | 83..312 | 211 | 30.1 | Plus |
| wtrw-PC | 986 | CG31284-PC | 234..478 | 83..312 | 211 | 30.1 | Plus |
