BS22939.complete Sequence
3434 bp assembled on 2011-02-16
GenBank Submission: KX805865
> BS22939.complete
GAAGTTATCAGTCGACATGAAGATGGTCGATAAGTCGTCCAAGTTGGTGG
ATAAATTTGCCGTAATCAGCGGCACCGGCGGCAGCGGCCCTGGAGGCGGT
CCGCTCAACCTGCAAAGTGGCGGAGGAGGCGGCGGTTCCGGCGGCGGAGG
AGGAGTCTCCGGATCTGGTGGCATATCCGGAACGGCTGGCTTGTCCGCCG
GAGCAGGAATGACCACTGGCCAGAAACCGGTGCCCATGAAGCTATTCGCC
GCCTGGGAAGTGGACCGAACGCCGCCCAATTGCATCCCAAGACTCTGTTC
GCTGACAATAACACGTCTGTCCATCCTGACTCCGCTGCCCGGTGACACCA
CCTCCTTATCGCTCGCGGTGAAGATGCAGAGCTCCAAGAGGACGCTGCGC
AGCCACGAGATTCCCATCAACGGCCTGGCCCTGACTTCATCCGCCTCCCT
GCAGGGCAACTCGCCGATGTCGGTGGCCGGAGGAGTTGGAGGTGGTGGTG
TTGGCACTCCGGGTAGTGTGGGCACTGGAGGCGGACTGGGCGTGGCTGTG
CCCTTGACAGAAACCGAGCTGGACTTGCACTTCAGTCTGCAGTATCCGCA
CTTTATCAAGAGAGATGGCAATAGACTGGTTATTTTACTGCAACGCCGCA
AAAAATACAAATCACGCACCATTTTGGGCTATAAAACGCTGGCCGAGGGC
ATCATTCGCATGGACGCGGTGCTCCAGAAGTCGATGGACATGATCATCGA
GCTCACCGCTTCCGGGAAGAATGGCAGACCTGGCACCGTGGTGGCATGTC
TGCGAGCAGAGCGCGTTTCTTCCATTCCAGTTGACCATGACAATAAGAAC
AACAACAGCGTCCTGCTGGCAGATCGCGTTGCTGAGTACTCCGACGAGGA
CGAGGAGGCCGAGTTCAGTTCGGGCGAATTCAACGACGAGGCCAACGAAC
TGGGTCTGATCCGGGGCTACGATCCCAAGGATCCGAGGGACTACAACCAT
CCGGCCAAGCATGATATGCGCAAGTATCGCAACAAGCTGCAGCGCTCCGG
AATCGAGGACTGCGCCTTAGTGGGTCACCATCCCGGCAGCATTCAGCACC
ATCATCCCGGCGTGGTCGTCGATAGCGATAGCGAGTTCGAGATGAAGGAC
AAGAGTTCGTCACGGGCCAAGTTTAGCCGGACGATCTCGCTGCAGCAGCG
AAATTTCAAGCAAAAGATCGTGGCACTTTTGAAGCGGTTCAAGGTGAGCG
AGGAGCTGGAGGGAGAGTCCGGTCATCGAGGCACGGCGGCGCTGCGCGGA
GAACGCGACCTGGATGCGCTCTTCCAGGAGCTGGAGTCGCTGTCCTGTTG
CGAGGGCGACGACTCCGGACCGGACATGGACAGCATATCGGTGGGCTCCA
CGCCGAAGCCATCGCTGCGTCCCTTTTTCACCAACTCGCGGATTATGTTG
CACGACAACATCACCGGAAACGGCGGAGATCTGAGCCAATTGGTGGGCGG
TGGCCTTGGACCCGGAACCGGAACAGCTGATCGCGGGGGTAATGACAGTT
CCGGCAATGAGGGCAACGCTGGCTATACGGATGGCCAGAACTCTGATCCG
CAAAATAGTCCGCCCAGGGACAAGGACTACCTGCGCCTGCAGCAGATGCA
GCAGCAGCAGTTGACCCCAGTGAGCTCTGTGGCTGCCAGCATGGGTAGCG
GGAGCGTGATAACGCCCGCTCAGACGGAGAAGCGGTCACGATTGTTCCGA
ACTTCCAGCAATACTCCGGCAAATGCAGGAAGCGGTGGCAACAGTGTCAG
TGCCATTAGCGCATCGGGAGGCGGCAAGAGGAAGCACACCCTGAGCCTGA
GTGCCGAGCCGAGATCCGTGCTAGAGGCTTGCCTGTCGCCCACCAATGTG
GAGCCACGCAAGCTGCTGCTCGACCAGCTGAGTCGCGTGTTCGCCGGCGA
GGACAGCGCCATTCCGGAGGTGGTGACCATCATTAGCCCGCCGGAGGCGT
TGGGTGGCAGTGCGCTGCTGGCCAAACTGGTCACGCTCTTTGCCAACTCC
TTCAAGCCGGCCTTCGTGCCGCAAAACACTGCCGAGGTCAAGGCGGTGCT
GCAGGCGCTCATGGCCAAGATCCAGAAGTATTGCAACTCCAACGCCAAGC
CACCGCACACGGTGAAGGTGCTGCTGATTGGTGGAGATTGGCTGCAGGGA
GCCACTCTGCGACACTACGTCGAACTGATGGGAGTGCGCCCTCCAGATTG
GCTGAATCACTTGCGCTTCTACCTGGTCCCCGTCGGCGGCAGTTGCGGCA
GTGTTGCCCGCCATCTCAGCCAGATGGATCAGGCATACGCGGTGATGTTT
GGTTCGGACAACTGGACGCAGCTGTGCGAACGGGCGGCAGCCACAGCGGC
AGCGGTCAGTGCGGTGACCACAGTGAATGCCACCGCGCTGACAACCAACC
TCGCGGATGCGGCAGGTGTTGCCAAGTCCGACATCGCAGAATTGGTGCAG
CGTATTCAGCGCTACCTACTGGCGGCAGGTCCCTGCACGCAGATACCCAT
TGCCGAAGCTATGGTTAACTACAAGGACGAGGACTCCTGCCAGATATTTG
TGCCGTTTGTTAGTGATGTTCGCATTGGGTATCTGGACGCCCAGGCCTCG
CTGGATCTTGAAGAAAATGCAGCTGGCTCCAACGCGGTGGGCAGTGGACT
GGGTTCTGGATCCGCCTCAAGCTCAGCCATCCCCATAGGCAGCCAGAGCT
CGCCGAATGTGCACGGCGTAGTGTCTGGCTCGCCGCCCCAGCAGCAGAGC
TTGGGACGCATCTCACCGCCTCTGCAAACGCCACCGTCATCCGCATCCTC
TCATCGGGAGCGAAATACCAGTGAATCGCTTAGTACGCCGTCGTCGGTGC
AGCAGCAGTCTTTCAGTGGAGCTCTTGCGGCGGCCGAAGCAGTGGAACTG
CAAGTTGACTATTGGCCCCTGGTGAGGCCGGGCGAAGGTCATGCCAAGGA
GTCTAAGGGTGGCTTGTCCAAGGGCAGCGACGCTGGCGGCAAGAATAGCA
TTAAGAGTACGTTTAGGAACCTGCAGGTGTGGCGTCTGCCACAGCATGCA
CAGCAATTGGGTGATATGTTCAATGGACTGACTGTTAGTTTCGCCACCAA
GGAAAAGAAGCAGAAGCAAATTATGCGCTTGGGCAAAAAGAAGGATAAGG
AGCGTGATCTCGAGAAGGAGCAATGTGTGGAGGGCGTCGCCCGTTTGATT
TGCTCACCGAAACAATCGCATCCAGTGCCACTGCGAGTGTACATTGATGG
CACCGAGTGGACGGGAGTCAAGTTCTTCCAAGTATCGTCGCAATGGCAAA
CGCACGTCAAGAACTTTCCGATTGCGCTCATCGGCTGCACTCCCATGTCC
TGTGCTGAATTATCCTAGAAGCTTTCTAGACCAT
BS22939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KrT95D-RF | 3402 | CG5405-PF | 1..3402 | 17..3418 | 16980 | 99.9 | Plus |
| KrT95D-RC | 3402 | CG5405-PC | 1..3402 | 17..3418 | 16980 | 99.9 | Plus |
| KrT95D-RD | 2529 | CG5405-PD | 633..2529 | 1522..3418 | 9440 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KrT95D-RF | 4659 | CG5405-RF | 1058..4461 | 15..3418 | 16990 | 99.9 | Plus |
| KrT95D-RC | 4881 | CG5405-RC | 378..3781 | 15..3418 | 16990 | 99.9 | Plus |
| KrT95D-RD | 3121 | CG5405-RD | 1027..2923 | 1522..3418 | 9440 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24000180..24000781 | 2130..1529 | 2995 | 99.8 | Minus |
| 3R | 32079331 | 3R | 23999007..23999562 | 3170..2615 | 2780 | 100 | Minus |
| 3R | 32079331 | 3R | 23999633..24000117 | 2615..2131 | 2425 | 100 | Minus |
| 3R | 32079331 | 3R | 24003416..24003765 | 1529..1180 | 1750 | 100 | Minus |
| 3R | 32079331 | 3R | 24013296..24013630 | 624..290 | 1675 | 100 | Minus |
| 3R | 32079331 | 3R | 24005688..24005999 | 1180..869 | 1560 | 100 | Minus |
| 3R | 32079331 | 3R | 24030494..24030770 | 291..15 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 24012983..24013232 | 872..623 | 1235 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23998638..23998770 | 3418..3286 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 23998830..23998946 | 3287..3171 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:12:45 has no hits.
BS22939.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:08 Download gff for
BS22939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KrT95D-RC | 363..3764 | 17..3418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:50 Download gff for
BS22939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KrT95D-RC | 380..3781 | 17..3418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:51 Download gff for
BS22939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KrT95D-RC | 380..3781 | 17..3418 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:51 Download gff for
BS22939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23998638..23998768 | 3288..3418 | 100 | <- | Minus |
| 3R | 23998830..23998946 | 3171..3287 | 100 | <- | Minus |
| 3R | 23999007..23999562 | 2615..3170 | 100 | <- | Minus |
| 3R | 23999634..24000117 | 2131..2614 | 100 | <- | Minus |
| 3R | 24000180..24000780 | 1530..2130 | 99 | <- | Minus |
| 3R | 24003416..24003764 | 1181..1529 | 100 | <- | Minus |
| 3R | 24005688..24005995 | 873..1180 | 100 | <- | Minus |
| 3R | 24012983..24013230 | 625..872 | 99 | <- | Minus |
| 3R | 24013296..24013628 | 292..624 | 100 | <- | Minus |
| 3R | 24030494..24030768 | 17..291 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:50 Download gff for
BS22939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19856216..19856490 | 17..291 | 100 | | Minus |
| arm_3R | 19824360..19824490 | 3288..3418 | 100 | <- | Minus |
| arm_3R | 19824552..19824668 | 3171..3287 | 100 | <- | Minus |
| arm_3R | 19824729..19825284 | 2615..3170 | 100 | <- | Minus |
| arm_3R | 19825356..19825839 | 2131..2614 | 100 | <- | Minus |
| arm_3R | 19825902..19826502 | 1530..2130 | 99 | <- | Minus |
| arm_3R | 19829138..19829486 | 1181..1529 | 100 | <- | Minus |
| arm_3R | 19831410..19831717 | 873..1180 | 100 | <- | Minus |
| arm_3R | 19838705..19838952 | 625..872 | 99 | <- | Minus |
| arm_3R | 19839018..19839350 | 292..624 | 100 | <- | Minus |
BS22939.pep Sequence
Translation from 16 to 3417
> BS22939.pep
MKMVDKSSKLVDKFAVISGTGGSGPGGGPLNLQSGGGGGGSGGGGGVSGS
GGISGTAGLSAGAGMTTGQKPVPMKLFAAWEVDRTPPNCIPRLCSLTITR
LSILTPLPGDTTSLSLAVKMQSSKRTLRSHEIPINGLALTSSASLQGNSP
MSVAGGVGGGGVGTPGSVGTGGGLGVAVPLTETELDLHFSLQYPHFIKRD
GNRLVILLQRRKKYKSRTILGYKTLAEGIIRMDAVLQKSMDMIIELTASG
KNGRPGTVVACLRAERVSSIPVDHDNKNNNSVLLADRVAEYSDEDEEAEF
SSGEFNDEANELGLIRGYDPKDPRDYNHPAKHDMRKYRNKLQRSGIEDCA
LVGHHPGSIQHHHPGVVVDSDSEFEMKDKSSSRAKFSRTISLQQRNFKQK
IVALLKRFKVSEELEGESGHRGTAALRGERDLDALFQELESLSCCEGDDS
GPDMDSISVGSTPKPSLRPFFTNSRIMLHDNITGNGGDLSQLVGGGLGPG
TGTADRGGNDSSGNEGNAGYTDGQNSDPQNSPPRDKDYLRLQQMQQQQLT
PVSSVAASMGSGSVITPAQTEKRSRLFRTSSNTPANAGSGGNSVSAISAS
GGGKRKHTLSLSAEPRSVLEACLSPTNVEPRKLLLDQLSRVFAGEDSAIP
EVVTIISPPEALGGSALLAKLVTLFANSFKPAFVPQNTAEVKAVLQALMA
KIQKYCNSNAKPPHTVKVLLIGGDWLQGATLRHYVELMGVRPPDWLNHLR
FYLVPVGGSCGSVARHLSQMDQAYAVMFGSDNWTQLCERAAATAAAVSAV
TTVNATALTTNLADAAGVAKSDIAELVQRIQRYLLAAGPCTQIPIAEAMV
NYKDEDSCQIFVPFVSDVRIGYLDAQASLDLEENAAGSNAVGSGLGSGSA
SSSAIPIGSQSSPNVHGVVSGSPPQQQSLGRISPPLQTPPSSASSHRERN
TSESLSTPSSVQQQSFSGALAAAEAVELQVDYWPLVRPGEGHAKESKGGL
SKGSDAGGKNSIKSTFRNLQVWRLPQHAQQLGDMFNGLTVSFATKEKKQK
QIMRLGKKKDKERDLEKEQCVEGVARLICSPKQSHPVPLRVYIDGTEWTG
VKFFQVSSQWQTHVKNFPIALIGCTPMSCAELS*
BS22939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KrT95D-PF | 1133 | CG5405-PF | 1..1133 | 1..1133 | 5823 | 100 | Plus |
| KrT95D-PC | 1133 | CG5405-PC | 1..1133 | 1..1133 | 5823 | 100 | Plus |
| KrT95D-PA | 1175 | CG5405-PA | 1..1175 | 1..1133 | 5770 | 96.4 | Plus |
| KrT95D-PB | 1175 | CG5405-PB | 1..1175 | 1..1133 | 5770 | 96.4 | Plus |
| KrT95D-PD | 842 | CG5405-PD | 1..842 | 334..1133 | 4055 | 95 | Plus |
