BS22941.complete Sequence
1625 bp assembled on 2011-02-16
GenBank Submission: KX803613
> BS22941.complete
GAAGTTATCAGTCGACATGGAGATCATTCTACGACTGCTGGCCTTCATTC
TGAATGCCTTTGGCATGTTGGTGAATAAGATTCTAGATTTTGTATTGCCC
CGTCAGAAACCCAAATTTTCGGGCATTCGTAATCCCCTGCTGAAGAAGTC
CGTCGTTGAATTGGTCACCCAATTGCGACGCGGCGAGATCACCTCGGTGG
AGTTGGTTAGCGCCTATATAGCACGTGTGCAGGAAGTGAATCCTTCTCTG
AATGCCGTTGTCGAGGATCGATTCGAGGCTGCCCTCCAAGATGCAAAATT
GGCAGATCAGTTCATCGAAAAGGCGAGCTCTGAGTTCGATCGTGTGGCCC
TGTACACCAAGTATCCCATACTGGGTGTACCGTTTACTGTCAAGGAGTCA
TGTGGTCTTAAAGGATTATCCTTTGCCGTGGGCAGTCTTGCTCGCAAAAA
TATGAAAGCCCCCCAGGACGGCGATGTGGTTGAACTGGTCCGTGCTGCTG
GTGGCATACCCCTTTTGGTGTCTGCCAATCCAGAGTTTTGCATGAGTTTC
GAAACCAGCAATAATATCCAAGGACGTTGCTTGAATCCATATGATCTGCA
ACGAACTTCCGCCGGATCTTCTGGCGGCGAGGCATCATTGAATGGCTGTG
GAGCCACAACTTTTGGTGTGGGCTCCGATATCAGTGGTTCCATTCGCCTG
CCGGCTCTGTTCTGCGGCGTTTTTGGCCACAAGCCCACTGGCGGGCTTAC
GTCGGTCAAGGGTCACTTCCCCTACTCGTTGACGGACAAGAAATTCTCCG
AGATGCTGCAGATCGGTCCCATCACAAGATTCGCCAGGGATTTGCCCTTG
CTGTTGGAAATAATGGCGGGCGATAAAAAACACAAACTGAAAATGTCTGA
ACCAGTTGCCCTGAAGGACATGAAGGTATACTATGCCTTTGGATACTCCG
GCTTTAACTGCCTCACCCATCCCGTGGTGGACTTCGACATAAAACTGGCC
ATCACCAAAGCTGTCACGTGCTTGGAAAGAGGAGGTGTGCAGTCCAAGAA
GTTGGATCTTAAATTCCTGAGAAACTCTCTCGAGATTGCCCTGGTTTCCC
TGGTGGACTTGAAGGGTCTGCCCAGTATCGTAACACAGCGGGCGGATCGT
GATCCATCGATGCGTTTGCTGATGGTGGAACTCTTCAACAGCATCATAGG
TCACTCAATCTTCACCAAAGAGGCCATGGTACTGGAGGTGATGAAGCGAT
TCAACGGCCTTATGGCCACTGGAAACATGGAAGAATACCGAGTTGAGGCC
CAGAAAATAAAGAGCCATCTGAATCAATTGCTTGGTACCCAAGGAGTCCT
CATCATGCCCACCTTCCACACTAGCGCCCTATGTTTTCACACCTCGCTGT
TAAACGTGACGGGGATCGACAATCTGCTGCTGTTCAACATCCTTGGTCTG
CCCGCCACCCATGTGCCCATGGGCACAAATCAACGGGGAATGCCCATAGG
GTTGCAGGTGGTGGCCGCCCAATATCAGGACAAACTCTGCCTGAAGGTCG
CCGCCGAACTGGAGGCCGTTTTTCACGGCTGGGTGCCACCGGTACCACAT
GACACATGAAAGCTTTCTAGACCAT
BS22941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7910-RB | 1593 | CG7910-PB | 1..1593 | 17..1609 | 7965 | 100 | Plus |
| CG7910-RA | 1593 | CG7910-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7910-RB | 1869 | CG7910-RB | 179..1778 | 12..1611 | 8000 | 100 | Plus |
| CG7910-RA | 1976 | CG7910-RA | 286..1885 | 12..1611 | 8000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8088076..8088591 | 412..927 | 2580 | 100 | Plus |
| 3R | 32079331 | 3R | 8089149..8089435 | 1325..1611 | 1435 | 100 | Plus |
| 3R | 32079331 | 3R | 8088819..8089093 | 1050..1324 | 1375 | 100 | Plus |
| 3R | 32079331 | 3R | 8087784..8088012 | 186..414 | 1145 | 100 | Plus |
| 3R | 32079331 | 3R | 8087537..8087712 | 12..187 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 8088642..8088769 | 924..1051 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:13:35 has no hits.
BS22941.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:12 Download gff for
BS22941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7910-RA | 291..1882 | 17..1608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:16 Download gff for
BS22941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7910-RA | 291..1882 | 17..1608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:10 Download gff for
BS22941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7910-RA | 291..1882 | 17..1608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:10 Download gff for
BS22941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8087542..8087712 | 17..187 | 100 | -> | Plus |
| 3R | 8087786..8088011 | 188..413 | 100 | -> | Plus |
| 3R | 8088078..8088589 | 414..925 | 100 | -> | Plus |
| 3R | 8088644..8088769 | 926..1051 | 100 | -> | Plus |
| 3R | 8088821..8089093 | 1052..1324 | 100 | -> | Plus |
| 3R | 8089149..8089432 | 1325..1608 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:16 Download gff for
BS22941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3914871..3915154 | 1325..1608 | 100 | | Plus |
| arm_3R | 3913264..3913434 | 17..187 | 100 | -> | Plus |
| arm_3R | 3913508..3913733 | 188..413 | 100 | -> | Plus |
| arm_3R | 3913800..3914311 | 414..925 | 100 | -> | Plus |
| arm_3R | 3914366..3914491 | 926..1051 | 100 | -> | Plus |
| arm_3R | 3914543..3914815 | 1052..1324 | 100 | -> | Plus |
BS22941.pep Sequence
Translation from 16 to 1608
> BS22941.pep
MEIILRLLAFILNAFGMLVNKILDFVLPRQKPKFSGIRNPLLKKSVVELV
TQLRRGEITSVELVSAYIARVQEVNPSLNAVVEDRFEAALQDAKLADQFI
EKASSEFDRVALYTKYPILGVPFTVKESCGLKGLSFAVGSLARKNMKAPQ
DGDVVELVRAAGGIPLLVSANPEFCMSFETSNNIQGRCLNPYDLQRTSAG
SSGGEASLNGCGATTFGVGSDISGSIRLPALFCGVFGHKPTGGLTSVKGH
FPYSLTDKKFSEMLQIGPITRFARDLPLLLEIMAGDKKHKLKMSEPVALK
DMKVYYAFGYSGFNCLTHPVVDFDIKLAITKAVTCLERGGVQSKKLDLKF
LRNSLEIALVSLVDLKGLPSIVTQRADRDPSMRLLMVELFNSIIGHSIFT
KEAMVLEVMKRFNGLMATGNMEEYRVEAQKIKSHLNQLLGTQGVLIMPTF
HTSALCFHTSLLNVTGIDNLLLFNILGLPATHVPMGTNQRGMPIGLQVVA
AQYQDKLCLKVAAELEAVFHGWVPPVPHDT*
BS22941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7910-PB | 530 | CG7910-PB | 1..530 | 1..530 | 2695 | 100 | Plus |
| CG7910-PA | 530 | CG7910-PA | 1..530 | 1..530 | 2695 | 100 | Plus |
| CG7900-PB | 536 | CG7900-PB | 1..533 | 1..529 | 1253 | 47.8 | Plus |
| CG5191-PB | 552 | CG5191-PB | 15..541 | 2..530 | 764 | 34 | Plus |
| CG5191-PF | 528 | CG5191-PF | 31..517 | 33..530 | 755 | 34.9 | Plus |
