BS22950.complete Sequence
1223 bp assembled on 2011-02-04
GenBank Submission: KX802823
> BS22950.complete
GAAGTTATCAGTCGACATGGTTCTGGAGAGTACTATGATATGCTTTGATA
ACAGCGACTTCCAGCGCAACGGAGACTACTTTCCAACTCGTCTCATCGTC
CAGAGAGATGGCATCAATCTGGTCTGCCTGACCAAGCTGCGTTCCAATCC
CGAGAACAATGTGGGCCTGATGACTCTGTCCAACACCGTTGAAGTGCTGG
CCACTCTTACTAGCGATGCAGGACGGATTTTCTCAAAGATGCATCTGGTT
CAGCCGAAGGGCGAGATAAACCTCCTGACCGGAATCCGAATTGCCCATCT
GGTGCTGAAGCATCGCCAAGGCAAGAACCACAAAATGCGCATCGTGGTCT
TTGTGGGCTCCCCCATCAATCACGAGGAGGGCGATCTAGTGAAGCAGGCC
AAGCGCCTCAAGAAGGAGAAGGTCAACGTAGACATAGTTAGCTTCGGTGA
TCATGGCAACAACAACGAGATTCTCACAGCATTCATCAACGCGCTTAATG
GCAAGGACGGCACCGGCTCCCATTTGGTCAGCGTGCCTCGGGGATCAGTT
TTGTCGGATGCCCTGCTGTCGTCACCCATCATTCAGGGCGAGGACGGCAT
GGGCGGAGCTGGCCTGGGCGGCAACGTCTTCGAATTCGGTGTAGATCCCA
ACGAGGACCCCGAACTGGCTCTCGCCTTGCGTGTGTCTATGGAGGAGCAA
CGGCAGCGCCAGGAGAGCGAGCAACGTCGCGCCAATCCCGATGGGGCTCC
ACCGACTGGCGGAGATGCTGGTGGCGGAGGCGGCGTTTCGGGATCTGGAC
CTGGAAACGAAGAAAGTGCCGGAGCAGAGAACGAAGCCAACACCGAGGAG
GCCATGCTGCAGCGTGCCCTGGCCCTGTCCACCGAAACACCCGAGGACAA
CTTGCCGGACTTTGCTAACATGACTGAGGAGGAACAGATTGCCTTCGCTA
TGCAGATGTCCATGCAGGACGCTCCCGACGACTCTGTTACCCAGCAAGCA
AAGCGCCCAAAGACGGACGAGGCAAACGCTCCCATGGACGTGGACGAGGA
TTACTCGGAGGTGATCGGAGACCCGGCCTTCTTGCAGAGCGTGCTGGAGA
ATCTGCCTGGTGTTGATCCCCAGTCGGAGGCGGTGCGCGATGCTGTCGGT
TCACTCAACAAGGACAAGGACAAAAAGAGCGACGGCAAGGACTCGCAAAA
AAAATAAAAGCTTTCTAGACCAT
BS22950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn10-RB | 1191 | CG7619-PB | 1..1191 | 17..1207 | 5955 | 100 | Plus |
| Rpn10-RA | 1191 | CG7619-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn10-RB | 1356 | CG7619-RB | 48..1239 | 17..1208 | 5960 | 100 | Plus |
| Rpn10-RA | 1422 | CG7619-RA | 114..1305 | 17..1208 | 5960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21537441..21538465 | 184..1208 | 5125 | 100 | Plus |
| 3L | 28110227 | 3L | 21537239..21537380 | 42..183 | 710 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS4 | 754 | BS4 BS4 754bp | 589..648 | 1103..1044 | 111 | 65 | Minus |
BS22950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-04 10:49:18 Download gff for
BS22950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros54-RA | 114..1293 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:22 Download gff for
BS22950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn10-RA | 114..1293 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:38 Download gff for
BS22950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn10-RA | 114..1293 | 17..1196 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:38 Download gff for
BS22950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21537113..21537138 | 17..42 | 100 | -> | Plus |
| 3L | 21537240..21537380 | 43..183 | 100 | -> | Plus |
| 3L | 21537441..21538453 | 184..1196 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:22 Download gff for
BS22950.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21530213..21530238 | 17..42 | 100 | -> | Plus |
| arm_3L | 21530340..21530480 | 43..183 | 100 | -> | Plus |
| arm_3L | 21530541..21531553 | 184..1196 | 100 | | Plus |
BS22950.pep Sequence
Translation from 16 to 1206
> BS22950.pep
MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVG
LMTLSNTVEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHR
QGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFGDHGNNN
EILTAFINALNGKDGTGSHLVSVPRGSVLSDALLSSPIIQGEDGMGGAGL
GGNVFEFGVDPNEDPELALALRVSMEEQRQRQESEQRRANPDGAPPTGGD
AGGGGGVSGSGPGNEESAGAENEANTEEAMLQRALALSTETPEDNLPDFA
NMTEEEQIAFAMQMSMQDAPDDSVTQQAKRPKTDEANAPMDVDEDYSEVI
GDPAFLQSVLENLPGVDPQSEAVRDAVGSLNKDKDKKSDGKDSQKK*
BS22950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn10-PB | 396 | CG7619-PB | 1..396 | 1..396 | 2026 | 100 | Plus |
| Rpn10-PA | 396 | CG7619-PA | 1..396 | 1..396 | 2026 | 100 | Plus |
