Clone BS22962 Report

Search the DGRC for BS22962

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:229
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG12470-RA
Protein status:BS22962.pep: full length peptide match
Sequenced Size:620

Clone Sequence Records

BS22962.complete Sequence

620 bp assembled on 2011-02-02

GenBank Submission: KX803195

> BS22962.complete
GAAGTTATCAGTCGACATGGGTAAAAAGGGCAAAGGAAAGAAGGGCAAGA
AGCCCGCCGCAGTTGTGGCTCCCATCGAAGCGCCACCATGTCCTCCGTGT
CCGGAACCACCAAAGCAGATGCAACCACTTGACGCTTGTCCAGAGTCTAG
CGGACCCCACGATGTCCTTCGGGCTCAACCGAATCATTACCCGGCTCTTC
TTCGTATTCCGGAAACAATGGCGGTGGTGGGCTCTGAGAATGGATGCTAC
GATAGCATTTGCAAGCTCCTGAGAGCCGGATTCCGGTGTGCCGAGCGGGT
TTTCGTGATGGCCCCTTGGGGCAACTACGTGGTTTTCCGGTATCACAACA
ATAATGACTTTATTTACTTCCTGTTTGATGGATGCACCTGCGATGTTAAT
AGGTTCCGCTATCTAGACCTCAGCTGCGGAACTGCTGGATTTCTTTTCTT
CGATAATATGCACGACGTTATTAGTTATATTATCCAGTCTCGAAAGACGC
GTCTATATCTGGAGAATCTAAACAAGATTGCCATTGATCAGATTGTGGAG
GAGTATGGCGCTGTAACGTACACCCAAAAGGCAAAATGCATGCGATTCGC
TTAAAAGCTTTCTAGACCAT

BS22962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12470-RA 588 CG12470-PA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12470-RA 1055 CG12470-RA 327..916 16..605 2950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 308207..308796 16..605 2950 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:02:19 has no hits.

BS22962.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-02 09:57:04 Download gff for BS22962.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 328..913 17..602 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:38 Download gff for BS22962.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 328..913 17..602 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:23 Download gff for BS22962.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 328..913 17..602 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:23 Download gff for BS22962.complete
Subject Subject Range Query Range Percent Splice Strand
X 308208..308793 17..602 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:38 Download gff for BS22962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 202241..202826 17..602 100   Plus

BS22962.pep Sequence

Translation from 16 to 603

> BS22962.pep
MGKKGKGKKGKKPAAVVAPIEAPPCPPCPEPPKQMQPLDACPESSGPHDV
LRAQPNHYPALLRIPETMAVVGSENGCYDSICKLLRAGFRCAERVFVMAP
WGNYVVFRYHNNNDFIYFLFDGCTCDVNRFRYLDLSCGTAGFLFFDNMHD
VISYIIQSRKTRLYLENLNKIAIDQIVEEYGAVTYTQKAKCMRFA*

BS22962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12470-PA 195 CG12470-PA 1..195 1..195 1070 100 Plus
ms(3)76Cc-PA 1174 CG9392-PA 1018..1151 30..162 287 42.6 Plus