BS22964.complete Sequence
2132 bp assembled on 2011-02-15
GenBank Submission: KX801540
> BS22964.complete
GAAGTTATCAGTCGACATGTCGGACGACAAGCGCTTCAACGCGGCGGGCT
TTGTAAAGTGCACGAGAAATCGGACGATAGAATACCTTTATCAGGATCAC
ACGCCGCCCAACCTGTGGAAACACGCGCCAATTGTGGATCCTCACAATCC
CTACGACCAGGATGAGAAAAAGCAATACAAAATGTTTACGTATCACGTAG
AGCATAGATACAATACGCTTCTGCCAGATATTCCCTTCGAAAGGCTGAAT
CTCATTAAAGAATATGTTCACACAAATCAGGTGAACACCACTGAGATTCT
TAATGAGCACATGACCACAAAGGAATATCTGGACGAGTATATTGCGCTGG
AGAATCAAATGCTAGCAGCCCGCTATGGAGCCATTGTCACAAGGAGAAGA
AGATTGGTTGATTCCGCGAGATTTATGGAGGACAATTTGGATGAGGGACT
GGCGAAAAAAATGTGCATGGACAAGAATCTGCCAATGGACACGAACGAAA
CTGTTCTTATTGACCAATCTTTGGTGGATGAAAACAGCAGGTCGTTAACC
ACAGCCGAGTCTACGATGGGCATCAGTCAGGCGGAGAACTCTACTTTAAA
GAGTAGCGAAGTCGAGGCGACTTTAAGCGTCAGCCATATAGAAAACTCCT
TAAGCGATAGCCAAGAAGAGAATCCTCCGCTGAGCAGCACATTAGCCATT
AACGAGTCTAGTGTTCTCGACAGCACGAGAGTGGATCCCATAAAAGATCT
CACTCTAGATGAACTGTTGCTAATCGATTCAGGGATCAGTATGGAAGAGC
TTTCCGATATTCAAATGCATACAGATTTAGAAGATCAACGCCAGTTGTCG
CCCATGTTGCAGATGGTTAGCCCATCGATGGAGGCAAAAACGCTCAATAT
CATTGAGATGGATGCTGATCTTATCATGAATGTTCCAAGGGAGGTGAGCT
ATCCTATTCTGCTGAATGTTATGGGTCTCCCCATAAAACGCCTGCGTCGG
AAATGCATCTTTAAACTTCCACCTGAGTTCGACTTATTCAGGCAAGCACG
CCTTCCTATTAAGCGAGAGGGACAACAAAAATCCCCAACCACTCCCAGAA
CTGTACTGCAAATTGGAAGAGAGGCTCCCCAAAATGAAAGAGAACCCGGC
TCCCCCTGTAGTTTAGAATTTGATGAGGACTTGAATTTTCTGGGTTTCCG
CCAACGTCGACCCACATTTGACTCGGGCTTCGATATCGAAGAGCCGCGTG
TATCAAGTTGTGTCTCCACTATCGGAGAAGTTAAAACTGAGCTTGAAGAT
GAGATTGAAGCCAACACCAATAATTTAACTGACGCGAGCGCCAGCGACGC
CTTGAATGAGAATGTGAACGATACAAAGGAAAGTGGGCTGGGAGATTCAC
TAGCGCAGGAATTAAACGCTTCCACCGAACCCAATGCGGAGAACAATACC
GCAAATTCATCGCAACTTGAAGTGACTGCTACAGAATCCTCCGGAACGCT
AAGCGGACTGGAAACCACAGTGGATTTAGGAATGGAGAGCGCGTTAGTTA
GTTCTGTATTGGATTTAAGTACCGAACCGAGTGCAATGGATAGTAACATT
ATAAATGTCACCCAACCTGACAATTCAGACCTAGAGATTTCAACCGTGCA
GGACCAAGATACCTTACATGACGAAGCAGATGCAAATGATTTGTCTGCTG
AAACACCCAATCCAATTGCCGACTCAGCAGTCGACGACTGCTCATTGATC
CGGGACTGGCATAGACGATTGGCTCCTGCTTTGGAAGCAGCCCATGAACG
GCAGAATTTCAATATTAAGGACTTGGGCACCGAGATCCTGGACATTTGCA
AGGCGGGCAACAGAACAGCCACGTTAGCCGACGTCATGGCTGACAAGGAT
CCTAGTATCATGTGTCGCTACATGCTGGCTTCCCTGGTACTGACGAACCA
CGGAAACGTGTCTCTGGATTTTGAAAATCGCGATAAAAGCCGAGAGATCA
ATGCGCTTTCCCATGCGGTACAACAAGATCAAGAGGCTGCATTAGATATA
TGTTCTTGCCAGATTATTTACCCGCAATCGTGTACAAATAACAAAAATAG
ACAAATGACTTTTTGAAAGCTTTCTAGACCAT
BS22964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-H2-RD | 2100 | CG14685-PD | 1..2100 | 17..2116 | 10485 | 100 | Plus |
| Cap-H2-RF | 2844 | CG14685-PF | 534..2507 | 16..1989 | 9855 | 99.9 | Plus |
| Cap-H2-RE | 2883 | CG14685-PE | 1379..2546 | 822..1989 | 5825 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-H2-RD | 2933 | CG14685-RD | 572..2672 | 16..2116 | 10490 | 100 | Plus |
| Cap-H2-RF | 3976 | CG14685-RF | 807..2780 | 16..1989 | 9855 | 99.9 | Plus |
| Cap-H2-RE | 4015 | CG14685-RE | 1652..2819 | 822..1989 | 5825 | 99.9 | Plus |
| Cap-H2-RF | 3976 | CG14685-RF | 3248..3348 | 1989..2089 | 505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10763143..10763951 | 16..824 | 4045 | 100 | Plus |
| 3R | 32079331 | 3R | 10764636..10765198 | 1185..1747 | 2800 | 99.8 | Plus |
| 3R | 32079331 | 3R | 10764147..10764373 | 822..1048 | 1135 | 100 | Plus |
| 3R | 32079331 | 3R | 10765249..10765444 | 1747..1942 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 10764443..10764578 | 1049..1184 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 10766028..10766128 | 1989..2089 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 10765513..10765560 | 1942..1989 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:06:33 has no hits.
BS22964.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:50 Download gff for
BS22964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-H2-RD | 573..2671 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:32 Download gff for
BS22964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-H2-RD | 573..2671 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:33 Download gff for
BS22964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-H2-RD | 573..2671 | 17..2115 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:33 Download gff for
BS22964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10764443..10764578 | 1049..1184 | 100 | -> | Plus |
| 3R | 10763144..10763951 | 17..824 | 100 | -> | Plus |
| 3R | 10764150..10764373 | 825..1048 | 100 | -> | Plus |
| 3R | 10764636..10765198 | 1185..1747 | 99 | -> | Plus |
| 3R | 10765250..10765444 | 1748..1942 | 100 | -> | Plus |
| 3R | 10765514..10765559 | 1943..1988 | 100 | -> | Plus |
| 3R | 10766028..10766128 | 1989..2089 | 100 | -> | Plus |
| 3R | 10766469..10766494 | 2090..2115 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:32 Download gff for
BS22964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6590165..6590300 | 1049..1184 | 100 | -> | Plus |
| arm_3R | 6588866..6589673 | 17..824 | 100 | -> | Plus |
| arm_3R | 6589872..6590095 | 825..1048 | 100 | -> | Plus |
| arm_3R | 6590358..6590920 | 1185..1747 | 99 | -> | Plus |
| arm_3R | 6590972..6591166 | 1748..1942 | 100 | -> | Plus |
| arm_3R | 6591236..6591281 | 1943..1988 | 100 | -> | Plus |
| arm_3R | 6591750..6591850 | 1989..2089 | 100 | -> | Plus |
| arm_3R | 6592191..6592216 | 2090..2115 | 100 | | Plus |
BS22964.pep Sequence
Translation from 16 to 2115
> BS22964.pep
MSDDKRFNAAGFVKCTRNRTIEYLYQDHTPPNLWKHAPIVDPHNPYDQDE
KKQYKMFTYHVEHRYNTLLPDIPFERLNLIKEYVHTNQVNTTEILNEHMT
TKEYLDEYIALENQMLAARYGAIVTRRRRLVDSARFMEDNLDEGLAKKMC
MDKNLPMDTNETVLIDQSLVDENSRSLTTAESTMGISQAENSTLKSSEVE
ATLSVSHIENSLSDSQEENPPLSSTLAINESSVLDSTRVDPIKDLTLDEL
LLIDSGISMEELSDIQMHTDLEDQRQLSPMLQMVSPSMEAKTLNIIEMDA
DLIMNVPREVSYPILLNVMGLPIKRLRRKCIFKLPPEFDLFRQARLPIKR
EGQQKSPTTPRTVLQIGREAPQNEREPGSPCSLEFDEDLNFLGFRQRRPT
FDSGFDIEEPRVSSCVSTIGEVKTELEDEIEANTNNLTDASASDALNENV
NDTKESGLGDSLAQELNASTEPNAENNTANSSQLEVTATESSGTLSGLET
TVDLGMESALVSSVLDLSTEPSAMDSNIINVTQPDNSDLEISTVQDQDTL
HDEADANDLSAETPNPIADSAVDDCSLIRDWHRRLAPALEAAHERQNFNI
KDLGTEILDICKAGNRTATLADVMADKDPSIMCRYMLASLVLTNHGNVSL
DFENRDKSREINALSHAVQQDQEAALDICSCQIIYPQSCTNNKNRQMTF*
BS22964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-H2-PD | 699 | CG14685-PD | 1..699 | 1..699 | 3578 | 100 | Plus |
| Cap-H2-PF | 947 | CG14685-PF | 179..840 | 1..662 | 3367 | 99.5 | Plus |
| Cap-H2-PG | 959 | CG14685-PG | 179..852 | 1..662 | 3344 | 97.8 | Plus |
| Cap-H2-PE | 960 | CG14685-PE | 179..853 | 1..662 | 3343 | 97.6 | Plus |
