BS22965.complete Sequence
1616 bp assembled on 2011-02-15
GenBank Submission: KX800740
> BS22965.complete
GAAGTTATCAGTCGACATGAACAAGCTACGTCAGATTCACTGCTCGTTGA
AAAATGCGTGTGTCCTGTGCAAACCGCATGTCCTGTCCAGTGCTGGCGTG
AGATTCTCCTGCGGCGATGGCAAGACGATGGCGAAGGGCGTGGTCGTCGG
CCTCTATCAGAAGGAAGGCGACAAGGATCCCAAGCTGACTCCCGCCGGCC
ACAAGATTGACCAGCGCGTCCAAGGCAAGCTGATGAAGGCGATCTGTGAA
ACGAAGTTGGACGGACGACTGGGTCGCGGCAAGGTGTTCCACAACATCGA
TACCGAATTCGCAGCCGTTGCCGTGGTGGGCGTGGGCCTGGAGGGCATCG
GCTTCAATGAACTGGAAATGCTGGACGAGGGTATGGAGTTCGTACGTGTG
GCCGCCGGCGTAGGTGCCAGATCCCTGCAGCAGCAGGGTATCACCAACGT
CTTGGTGGACGGCATGGACTACGCAGAGCAGGCGGCCGAGGGCTCCCAAC
TGGCCGTCTGGCGTTTCCCGGACAATCTGTCCAAGAAGAACATGCCGATG
GTGCCGACCCTGGAGCTATTCGAGTCGCCGGATCACGAGGGCTGGACTCG
TGGCATCTTCAAGGCGGAGGCCCAGAATTTGGCAAGACGCTTAAGCGATG
CCCCCGCCAACTGCATGACGCCTACCATGTTTGCCCAGGCCGCCGTGGAC
GCTCTGTGTCCCTGCGGCATTACCGTGGAGGTTCGCACCATGGACTGGAT
CGAGGCCCAGCGCCTAAATGCCTTTCTGATGATCGCCAAGGGCAGCTGTG
AGCCGCCAGTGCTCCTGGAGCTGAGCTACTGCGGCACCGCGCCCGATGAC
AAGCCCATTCTGTTCGTGGGCAAGGGCATCACCTTCAACTCTGGTGCCCT
CAACCTGCGCCCTTGCAGAGGCATGGATGAGTATCGGGGCAGCATGTCCG
CCGCCGCCTGCTGTGTGGCCATGATGCGCTGCATCGCCGCCCTGTCGCTG
CCCATCAATGTGACGTGCATCATTCCGTTGTGCGAAAACATGCCCTCAGG
AATGTCGGCGAAACCTGGCGATGTGGTCACCCTGCTCAATGGCAAGTCGA
TGGCCATACGTGATCTGGACAAGGCTGGTGTGGTTGTGCTATCGGATCCC
CTGCTCTACGGACAGAAGACGTATCTGCCCAGGTTGGTGGTGGATATTGC
CACCCTTAACACGGGAGTGAAGAAGGCCTTCGGTGGTGGCGCCACTGGCA
TCTGGTCCAACTCACACTACATCTGGAAGCAGTTCCAGCGAGCTGGCTCC
ATTTCCGGTGACCGTGTGTGGCGTCTGCCACTCTGGCAATACTACAGGCG
CCAGGTCACCGATGAGCGCGCCTATGATCTGAGCAACAATGGACGTGGAT
TGGCCAGCTCCTGCCTGGCGGCGGCCATCCTTCACGAACTAGTGCCCTGC
GTGGACTGGGCACATCTCGACACCCGTGGCACTGGACTCCTGTCCAAGTA
CGGTCTAGTGCCCTATCTAACTAAGAAGCGTATGACCGGACGACCCACCC
GAACCCTTGTTCAGTTCGTCTACCAAATGGCCTGTCCGGAGATGAAGTAA
AAGCTTTCTAGACCAT
BS22965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap7-RB | 1584 | CG13340-PB | 1..1584 | 17..1600 | 7920 | 100 | Plus |
| S-Lap7-RA | 1584 | CG13340-PA | 1..1584 | 17..1600 | 7920 | 100 | Plus |
| S-Lap4-RA | 1575 | CG32064-PA | 295..1559 | 323..1587 | 1375 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap7-RB | 2030 | CG13340-RB | 304..1887 | 17..1600 | 7920 | 100 | Plus |
| S-Lap7-RA | 2122 | CG13340-RA | 304..1887 | 17..1600 | 7920 | 100 | Plus |
| S-Lap4-RA | 2074 | CG32064-RA | 608..1872 | 323..1587 | 1375 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13778359..13779942 | 1600..17 | 7920 | 100 | Minus |
| 3L | 28110227 | 3L | 10491468..10492732 | 323..1587 | 1375 | 73.9 | Plus |
| 3L | 28110227 | 3L | 10466779..10467839 | 263..1323 | 640 | 70.7 | Plus |
| 2R | 25286936 | 2R | 13597170..13597760 | 299..889 | 450 | 71.7 | Plus |
| 2R | 25286936 | 2R | 16535791..16536029 | 608..846 | 370 | 77 | Plus |
| 2R | 25286936 | 2R | 16536554..16536665 | 1371..1482 | 215 | 79.5 | Plus |
| 2R | 25286936 | 2R | 13597896..13597974 | 1025..1103 | 185 | 82.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:07:01 has no hits.
BS22965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:51 Download gff for
BS22965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13340-RA | 304..1885 | 17..1598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:45 Download gff for
BS22965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap7-RA | 304..1885 | 17..1598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:43 Download gff for
BS22965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap7-RA | 304..1885 | 17..1598 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:43 Download gff for
BS22965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13778361..13779942 | 17..1598 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:45 Download gff for
BS22965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9665866..9667447 | 17..1598 | 100 | | Minus |
BS22965.pep Sequence
Translation from 16 to 1599
> BS22965.pep
MNKLRQIHCSLKNACVLCKPHVLSSAGVRFSCGDGKTMAKGVVVGLYQKE
GDKDPKLTPAGHKIDQRVQGKLMKAICETKLDGRLGRGKVFHNIDTEFAA
VAVVGVGLEGIGFNELEMLDEGMEFVRVAAGVGARSLQQQGITNVLVDGM
DYAEQAAEGSQLAVWRFPDNLSKKNMPMVPTLELFESPDHEGWTRGIFKA
EAQNLARRLSDAPANCMTPTMFAQAAVDALCPCGITVEVRTMDWIEAQRL
NAFLMIAKGSCEPPVLLELSYCGTAPDDKPILFVGKGITFNSGALNLRPC
RGMDEYRGSMSAAACCVAMMRCIAALSLPINVTCIIPLCENMPSGMSAKP
GDVVTLLNGKSMAIRDLDKAGVVVLSDPLLYGQKTYLPRLVVDIATLNTG
VKKAFGGGATGIWSNSHYIWKQFQRAGSISGDRVWRLPLWQYYRRQVTDE
RAYDLSNNGRGLASSCLAAAILHELVPCVDWAHLDTRGTGLLSKYGLVPY
LTKKRMTGRPTRTLVQFVYQMACPEMK*
BS22965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap7-PB | 527 | CG13340-PB | 1..527 | 1..527 | 2778 | 100 | Plus |
| S-Lap7-PA | 527 | CG13340-PA | 1..527 | 1..527 | 2778 | 100 | Plus |
| S-Lap4-PA | 524 | CG32064-PA | 1..520 | 1..524 | 2118 | 74.8 | Plus |
| S-Lap3-PD | 535 | CG32063-PD | 15..532 | 10..525 | 1989 | 70.8 | Plus |
| S-Lap3-PC | 535 | CG32063-PC | 15..532 | 10..525 | 1989 | 70.8 | Plus |
