BS22966.complete Sequence
1571 bp assembled on 2011-02-15
GenBank Submission: KX802139
> BS22966.complete
GAAGTTATCAGTCGACATGCTGCGCTCCCTTGCAACAACACGAAACGAAC
TTGGGGCCCTTCGCTCCGTGCTCCTGCGATCAAATAACGCCACCTATGTC
CGCCGATCGACGGGAAATGTGGTAGTGCGCGCCCTCAGCAGCCAGCTGAT
CAACTCCCGGAAACTCCAGAGCATCAGGTCGAAACTTAACACTAGCCAGT
CACCGGTCACATGGAGCTACAACTTCGCCCGTGCCTATGCCAACCTTCCG
GAACACATCAGGGTGCCACTGCCCGCACTTTCCCCGACTATGGAGCGCGG
ATCGATTGTCAGCTGGGAGAAGAAGGAGGGCGATAAGCTCAACGAAGGTG
ACTTGCTGTGCGAGATTGAGACGGATAAGGCCACCATGGGCTTTGAGACG
CCCGAGGAGGGCTTTCTAGCTAAGATTCTCATCCAGGGCGGCACCAAGGA
CGTTCCCGTTGGCCAGCTGCTGTGCATTATCGTGCCGGACCAAGGCAGCG
TAGCTGCTTTCGCGAACTTCAAGGACGACGGTGCCGCCGCAGCACCAGCT
GCTCCGGCAGCAGCTCCAGCTCCAGCACCGGCAGCAGCAGCAGCTCCGCC
ACCACCACCACCACCCGCCGCAGCTCCAGCAGCCGCTGCGCCTCCACCAG
CTCCCGCCGCTGCTCCAGCTGCAGCAGGTACGGGCCGTGTATATGCCAGT
CCCATGGCCAAGCGACTAGCCGAGGCACAACAGCTGCGTCTACAAGGCAA
GGGCAGTGGAGTCCATGGCTCAATTAAATCTGGTGATCTTGCAGGCCAGA
AAGCAGCAGCCAAGCCAGCTGCTGCGGCACCTGCCAAGGCCCCCAGGGCA
GCTGGAGCGCGCTACGAGGACATTCCGGTGACCAACATGCGCGCAGTGAT
TGCCAAACGTCTGCTGGAGTCCAAGACACAACTGCCTCACTACTACGTCA
CCGTGCAATGCCAAGTGGATAAGCTGCTGAAGTTCCGCGCGAAGGTGAAC
AAGAAGTACGAGAAGCAGGGTGCCCGCGTCTCTGTAAACGACTTCATTAT
CAAGGCCGTGGCCATTGCCAGTCTTAAGGTTCCCGAAGCGAACTCTGCCT
GGATGGACACAGTAATTCGCAAGTACGACGACGTCGATGTTTCGGTTGCT
GTCTCCACAGACAAGGGTCTGATTACCCCGATTGTTTTCAATGCCGACCG
CAAGGGTGTCCTGGAGATCTCTAAGGATGTCAAGGCGCTGGCAGCCAAGG
CGCGCGACAACAAACTTCAGCCCCACGAATTCCAGGGTGGCACCATCTCG
GTTTCTAATCTGGGCATGTTCGGTGTGAACCAGTTTGCCGCTGTCATCAA
CCCTCCTCAATCGTGCATCCTTGCCATTGGCACCACAACGAAACAGTTGG
TTGCTGATCCCGACAGTCTCAAGGGCTTCAAGGAGGTCAACATGCTGACG
GTCACCCTGAGTGCTGATCATCGTGTTGTGGATGGTGCTGTTGCTGCCAG
GTGGCTGCAGCACTTCCGCGACTACATGGAGGATCCTTCCAATATGGTAT
TGTAAAAGCTTTCTAGACCAT
BS22966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5261-RF | 1539 | CG5261-PF | 1..1539 | 17..1555 | 7635 | 99.7 | Plus |
| CG5261-RB | 1539 | CG5261-PB | 1..1539 | 17..1555 | 7635 | 99.7 | Plus |
| CG5261-RA | 1266 | CG5261-PA | 1..1266 | 290..1555 | 6300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5261-RF | 2195 | CG5261-RF | 200..1738 | 17..1555 | 7635 | 99.7 | Plus |
| CG5261-RB | 2331 | CG5261-RB | 336..1874 | 17..1555 | 7635 | 99.7 | Plus |
| CG5261-RA | 1955 | CG5261-RA | 121..1498 | 178..1555 | 6860 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7428279..7428680 | 346..747 | 1995 | 99.8 | Plus |
| 2L | 23513712 | 2L | 7429165..7429517 | 972..1324 | 1750 | 99.7 | Plus |
| 2L | 23513712 | 2L | 7428876..7429104 | 745..973 | 1145 | 100 | Plus |
| 2L | 23513712 | 2L | 7428044..7428218 | 175..349 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 7427201..7427363 | 17..179 | 785 | 98.8 | Plus |
| 2L | 23513712 | 2L | 7429742..7429872 | 1425..1555 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 7429581..7429684 | 1322..1425 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:07:49 has no hits.
BS22966.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:51 Download gff for
BS22966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5261-RB | 336..1872 | 17..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:07 Download gff for
BS22966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5261-RB | 336..1872 | 17..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:01 Download gff for
BS22966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5261-RB | 336..1872 | 17..1553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:01 Download gff for
BS22966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7427201..7427361 | 17..177 | 98 | -> | Plus |
| 2L | 7428047..7428216 | 178..347 | 100 | -> | Plus |
| 2L | 7428281..7428679 | 348..746 | 99 | -> | Plus |
| 2L | 7428878..7429104 | 747..973 | 100 | -> | Plus |
| 2L | 7429167..7429515 | 974..1322 | 99 | -> | Plus |
| 2L | 7429582..7429684 | 1323..1425 | 100 | -> | Plus |
| 2L | 7429743..7429870 | 1426..1553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:07 Download gff for
BS22966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7429743..7429870 | 1426..1553 | 100 | | Plus |
| arm_2L | 7427201..7427361 | 17..177 | 98 | -> | Plus |
| arm_2L | 7428047..7428216 | 178..347 | 100 | -> | Plus |
| arm_2L | 7428281..7428679 | 348..746 | 99 | -> | Plus |
| arm_2L | 7428878..7429104 | 747..973 | 100 | -> | Plus |
| arm_2L | 7429167..7429515 | 974..1322 | 99 | -> | Plus |
| arm_2L | 7429582..7429684 | 1323..1425 | 100 | -> | Plus |
BS22966.pep Sequence
Translation from 16 to 1554
> BS22966.pep
MLRSLATTRNELGALRSVLLRSNNATYVRRSTGNVVVRALSSQLINSRKL
QSIRSKLNTSQSPVTWSYNFARAYANLPEHIRVPLPALSPTMERGSIVSW
EKKEGDKLNEGDLLCEIETDKATMGFETPEEGFLAKILIQGGTKDVPVGQ
LLCIIVPDQGSVAAFANFKDDGAAAAPAAPAAAPAPAPAAAAAPPPPPPP
AAAPAAAAPPPAPAAAPAAAGTGRVYASPMAKRLAEAQQLRLQGKGSGVH
GSIKSGDLAGQKAAAKPAAAAPAKAPRAAGARYEDIPVTNMRAVIAKRLL
ESKTQLPHYYVTVQCQVDKLLKFRAKVNKKYEKQGARVSVNDFIIKAVAI
ASLKVPEANSAWMDTVIRKYDDVDVSVAVSTDKGLITPIVFNADRKGVLE
ISKDVKALAAKARDNKLQPHEFQGGTISVSNLGMFGVNQFAAVINPPQSC
ILAIGTTTKQLVADPDSLKGFKEVNMLTVTLSADHRVVDGAVAARWLQHF
RDYMEDPSNMVL*
BS22966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5261-PF | 512 | CG5261-PF | 1..512 | 1..512 | 2583 | 100 | Plus |
| CG5261-PB | 512 | CG5261-PB | 1..512 | 1..512 | 2583 | 100 | Plus |
| CG5261-PE | 496 | CG5261-PE | 1..496 | 1..512 | 2474 | 96.9 | Plus |
| CG5261-PD | 489 | CG5261-PD | 1..489 | 1..512 | 2437 | 95.5 | Plus |
| CG5261-PC | 473 | CG5261-PC | 1..473 | 1..512 | 2339 | 92.4 | Plus |
