BS22967.complete Sequence
1079 bp assembled on 2011-02-04
GenBank Submission: KX803324
> BS22967.complete
GAAGTTATCAGTCGACATGATGTACTCTAAGGCTGAAGTAGTCCAGGCAG
CGAACATGTCGCTGGGTGCCATGCATTGTACGCGATGTGCCGACGGCTTC
GAGCCGACTGAGAAGATTGTTAACTCCAATGGAGAACTCTGGCACACCCA
GTGCTTCGTATGTGCCCAGTGCTTCCGACCCTTCCAGGATGGGATATTCT
ACGAGTTCGAGGGCCGTAAGTACTGTGAACGCGACTTTCACGTGCTCTTC
GCTCCCTGCTGCAACAAGTGCGGCGAGTTCGTCATCGGACGGGTCATCAA
GGCCATGTCAGCTAGCTGGCATCCACAGTGCTTCCGCTGCCAATTGTGCG
CCAAGGAGCTGGCTGATTGCGGATTCATCAAGAACCAGAACCGCGCCTTG
TGTCACGAGTGCAATGCCAAGGTGAAGGCGGAGATTACCGGCCGCTATGT
ATGCCAAAAATGCCACGGCCTCATCGACGAGGAGCCTTTGCGATTCCGGG
GCGAAGTGTACCACGGCTATCACTTCAGTTGCACGGCCTGCGGCACAGAG
TTGGATTCCACTGCTCGGGAGGTCAAGAGCCGGCCAGGATTGGCTGCTAA
CGATATGAACGAACTGTATTGTCTGCGTTGTCACGATAAAATGGGCATTC
CCATATGTGGTGCCTGTCGTCGTCCGATTGAGGAGAGGGTGGTAACGGCG
CTCGGAAAGCACTGGCATGTGGAACATTTCGTGTGCGCCAAGTGCGAGAA
ACCCTTCTTGGGTCACCGACACTACGAGAAGCGGGGATTGGCCTACTGCG
AGACGCACTATCATCAGCTCTTTGGCAACCTGTGCTTCGTCTGCAACCAG
GTTATTGGAGGCGATGTTTTCACTGCCTTGAACAAGGCCTGGTGTGTGCA
CCACTTTGCGTGCTCCGTGTGCGACACGAAGATGACACAAAAATCGAAAT
TCTACGAGTACGACGAGAAGCCGGTGTGCAAAAAGTGCTATGACCGATTT
CCAAACGAACTCAGACGACGTCTGCGCACCGCCCACGAGATGACAATGAA
AAAGAACACCTAAAAGCTTTCTAGACCAT
BS22967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RC | 1047 | CG7954-PC | 1..1047 | 17..1063 | 5235 | 100 | Plus |
| stck-RB | 1038 | CG7954-PB | 15..1038 | 40..1063 | 5120 | 100 | Plus |
| stck-RD | 1008 | CG7954-PD | 1..1008 | 56..1063 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RC | 1335 | CG7954-RC | 54..1101 | 16..1063 | 5240 | 100 | Plus |
| stck-RD | 1500 | CG7954-RD | 239..1262 | 40..1063 | 5120 | 100 | Plus |
| stck-RB | 1388 | CG7954-RB | 127..1150 | 40..1063 | 5120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8358649..8358954 | 160..465 | 1530 | 100 | Plus |
| 3R | 32079331 | 3R | 8359206..8359465 | 607..866 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 8359529..8359726 | 866..1063 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 8359009..8359150 | 466..607 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 8358471..8358590 | 40..159 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:13:36 has no hits.
BS22967.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:46 Download gff for
BS22967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 47..1078 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:29 Download gff for
BS22967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 55..1086 | 17..1048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:14 Download gff for
BS22967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 55..1086 | 17..1048 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:14 Download gff for
BS22967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8358382..8358404 | 17..39 | 100 | -> | Plus |
| 3R | 8358471..8358590 | 40..159 | 100 | -> | Plus |
| 3R | 8358649..8358954 | 160..465 | 100 | -> | Plus |
| 3R | 8359009..8359150 | 466..607 | 100 | -> | Plus |
| 3R | 8359207..8359465 | 608..866 | 100 | -> | Plus |
| 3R | 8359530..8359711 | 867..1048 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:29 Download gff for
BS22967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4184104..4184126 | 17..39 | 100 | -> | Plus |
| arm_3R | 4184193..4184312 | 40..159 | 100 | -> | Plus |
| arm_3R | 4184371..4184676 | 160..465 | 100 | -> | Plus |
| arm_3R | 4184731..4184872 | 466..607 | 100 | -> | Plus |
| arm_3R | 4184929..4185187 | 608..866 | 100 | -> | Plus |
| arm_3R | 4185252..4185433 | 867..1048 | 100 | | Plus |
BS22967.pep Sequence
Translation from 16 to 1062
> BS22967.pep
MMYSKAEVVQAANMSLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCA
QCFRPFQDGIFYEFEGRKYCERDFHVLFAPCCNKCGEFVIGRVIKAMSAS
WHPQCFRCQLCAKELADCGFIKNQNRALCHECNAKVKAEITGRYVCQKCH
GLIDEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNEL
YCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGH
RHYEKRGLAYCETHYHQLFGNLCFVCNQVIGGDVFTALNKAWCVHHFACS
VCDTKMTQKSKFYEYDEKPVCKKCYDRFPNELRRRLRTAHEMTMKKNT*
BS22967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-PC | 348 | CG7954-PC | 1..348 | 1..348 | 1982 | 100 | Plus |
| stck-PB | 345 | CG7954-PB | 6..345 | 9..348 | 1943 | 100 | Plus |
| stck-PD | 335 | CG7954-PD | 1..335 | 14..348 | 1920 | 100 | Plus |
| stck-PA | 335 | CG7954-PA | 1..335 | 14..348 | 1920 | 100 | Plus |
| Pax-PB | 556 | CG31794-PB | 322..553 | 81..327 | 400 | 32.7 | Plus |
