BS22968.complete Sequence
1442 bp assembled on 2011-02-04
GenBank Submission: KX803446
> BS22968.complete
GAAGTTATCAGTCGACATGCTGATCAGCATATTCAAATCGGGCATCTTCC
AGTGGCAGTACCGCCGCCAACTGCTGGTCTCTTTGAGTGCCACTCTGATA
ACCTTCTGCCATGGCATCGCCCTGGGCTGGCTGTCGCCCATGCTGCCAAA
GCTGCTCTCCCCACAGGAGACGCCACTCTCCTTTTACATTGACGTGAACG
AGGCCTCCTGGCTGGGAGCAGTCATTAGCATCGGTGGCATAAGCGGAAAC
TTCTCGTTTTCCTACCTGATGAACCGCTTTGGCCGAAAAGTGTCGATTTA
CGCCCTCGCAGTGCCGCACACGTGCATTTGGTTCCTGTTCTATTTCGCCC
AGAGCATCGAGTGGCTCTATGTGGCCAGGGTGTTTGCCGGCCTAACTGGC
GGCGGCATGTTTGTCGTCTTACCCATCTTCATTGGCGAAATCGCCGACAA
TAGCATTCGAGGTCGCCTGTGCTCCTTTTTTACGCTCACCATGAACACGG
GCATAATGGTGGGCTTTGTGGTGTCCTCGCACATCGCCTATCACGTGATA
CCCTGTGCCGTCGTTGGACTGCCCGTGCTGTACGTGCTCCTGGCCACGCG
ATACCCGGAGCCACCGCAGCAGTTAATCAGGTGGAAGCGCGAGGAGGAGG
CCGAGAAGTCACTAAGGTACTATCGCCGCTGCGACGGACCCAATGTTTCC
AAGGAGGAGGAGCGAGCTTATCAGAAACACTTCGACGAAATGCGGCTGGC
CATCCAACAGCAAAACAACGACACTGACGACAATGGCCTCTCAATGTCCG
ATTTCCTCACCAAGCGCTCCTTGAAAGCCCTGGCCACGGGATTAGTTTTG
ATGGTAGCCAACATCTTCACGGGCACCTTCGCCTTCAACAACTACATGTC
CAACATCTTTGATGCCGTGCACACTCAGCTGGATCCCAATACGAACACCA
TTATTATTGGAGCAGTGCAGATCCTGGGCACGCTGGCCAGCATATATTTG
GTGGATCGCTATGGGCGCAAGATCCTGCTGATAGTGTCCTGTGCAGGCAG
TGGCATCGGAACTTCCGCCTTTGGACTGTACGCCTTCTATGCGGAGGAGC
AGAAGGTGGACCTATCGGCCTTCTCCGCCTGGCTGCCCGTCACCCTGATG
GCCTTCATCATCTTCATTGCCAACGTGGGCGTTATCTCGGTGACGATGGT
GGTTTTGGTGGAGATCCTGCCGCAGAAGATCCGCGCGGTGGCCACCAGTT
TCTGCCTGGGCTGCCTCAGTTTCTTCGCCTTCGCCTCGCTGAAGACTTTC
CCGCTGATGATGTTCCACCTGGGTCTGGCGGCTACCATGTGGTTCTGTGC
CGCCGTCAGCGTCATTTGTCTGTTCTATGTGGTGGTCTGCCTGGAGGAGA
CAAAGGGTCGCTCCATGTATGACTAAAAGCTTTCTAGACCAT
BS22968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15406-RA | 1410 | CG15406-PA | 1..1410 | 17..1426 | 6900 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15406-RA | 1646 | CG15406-RA | 206..1615 | 17..1426 | 6900 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3311032..3311651 | 807..1426 | 2980 | 98.7 | Plus |
| 2L | 23513712 | 2L | 3310622..3310976 | 452..806 | 1775 | 100 | Plus |
| 2L | 23513712 | 2L | 3309770..3310003 | 89..322 | 1140 | 99.1 | Plus |
| 2L | 23513712 | 2L | 3310073..3310204 | 322..453 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 3309427..3309499 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:14:01 has no hits.
BS22968.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:47 Download gff for
BS22968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15406-RA | 206..1613 | 17..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:39 Download gff for
BS22968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15406-RA | 206..1613 | 17..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:22 Download gff for
BS22968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15406-RA | 206..1613 | 17..1424 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:22 Download gff for
BS22968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3309427..3309499 | 17..89 | 100 | -> | Plus |
| 2L | 3309771..3310003 | 90..322 | 99 | -> | Plus |
| 2L | 3310074..3310204 | 323..453 | 100 | -> | Plus |
| 2L | 3310624..3310976 | 454..806 | 100 | -> | Plus |
| 2L | 3311032..3311649 | 807..1424 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:39 Download gff for
BS22968.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3309427..3309499 | 17..89 | 100 | -> | Plus |
| arm_2L | 3309771..3310003 | 90..322 | 99 | -> | Plus |
| arm_2L | 3310074..3310204 | 323..453 | 100 | -> | Plus |
| arm_2L | 3310624..3310976 | 454..806 | 100 | -> | Plus |
| arm_2L | 3311032..3311649 | 807..1424 | 98 | | Plus |
BS22968.pep Sequence
Translation from 16 to 1425
> BS22968.pep
MLISIFKSGIFQWQYRRQLLVSLSATLITFCHGIALGWLSPMLPKLLSPQ
ETPLSFYIDVNEASWLGAVISIGGISGNFSFSYLMNRFGRKVSIYALAVP
HTCIWFLFYFAQSIEWLYVARVFAGLTGGGMFVVLPIFIGEIADNSIRGR
LCSFFTLTMNTGIMVGFVVSSHIAYHVIPCAVVGLPVLYVLLATRYPEPP
QQLIRWKREEEAEKSLRYYRRCDGPNVSKEEERAYQKHFDEMRLAIQQQN
NDTDDNGLSMSDFLTKRSLKALATGLVLMVANIFTGTFAFNNYMSNIFDA
VHTQLDPNTNTIIIGAVQILGTLASIYLVDRYGRKILLIVSCAGSGIGTS
AFGLYAFYAEEQKVDLSAFSAWLPVTLMAFIIFIANVGVISVTMVVLVEI
LPQKIRAVATSFCLGCLSFFAFASLKTFPLMMFHLGLAATMWFCAAVSVI
CLFYVVVCLEETKGRSMYD*
BS22968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15406-PA | 469 | CG15406-PA | 1..469 | 1..469 | 2420 | 100 | Plus |
| CG33282-PB | 460 | CG33282-PB | 1..459 | 2..469 | 942 | 41.5 | Plus |
| CG15408-PA | 466 | CG15408-PA | 1..465 | 1..469 | 907 | 40 | Plus |
| CG3285-PB | 466 | CG3285-PB | 23..463 | 16..467 | 902 | 39.1 | Plus |
| CG3285-PA | 466 | CG3285-PA | 23..463 | 16..467 | 902 | 39.1 | Plus |
