BS22976.complete Sequence
1934 bp assembled on 2011-02-15
GenBank Submission: KX804074
> BS22976.complete
GAAGTTATCAGTCGACATGGGTAAAATTCCGGCCATCGGCATCGACTTGG
GCACCACCTACTCCTGTGTGGGAGTTTGGCAGAACAGCAAGGTGGAGATC
ATCGCCAACGATCAGGGAAACCGCACCACGCCCTCCTATGTGGCATTCAA
CGAGACGGAGCGCTTGATTGGCGATCCGGCCAAGAACCAGGTGGCCATGA
ATGCCAAGAACACGGTTTTCGATGCCAAGCGATTGATTGGACGGAAGTTC
GACGACAAGAAGATACAGGAGGACCTGAAGCTCTGGCCCTTCAAGGTCAT
CAATGAGAAGGGAAAGCCGAAGATCGAGGTGGAGTTCAAGGGCGAACGGA
AGCGATTTGCCCCCGAGGAGATCAGTTCGATGGTGCTGACCAAGATGCGC
GAAATCGCCGAGGTCTATCTGGGTGGCAAGGTGAAGGACGCGGTGGTCAC
AGTGCCGGCCTACTTCAATGATAGCCAGCGTCAGGCGACCAAGGATGCGG
GCTCCATTGCTGGACTGAATGTGCTGAGGATCATCAATGAGCCCACTGCG
GCAGCTCTGGCCTATGGGCTGGATAAGAATCTTAAGGGAGAGCGTAATGT
GCTCATCTTCGACTTGGGCGGCGGCACCTTCGACGTCTCCGTACTGAGCA
TCGATGAGGGTTCCCTGTTCGAGGTGAAGGCCACGGCCGGCGATACCCAT
TTGGGTGGTGAGGATTTCGACAACCGGTTGGTAAATCATTTTGCCGAGGA
ATTCAAGCGGAAGCACAAGTCGGACATCAAGGGAAATGCCAGAGCGCTGA
GACGCCTGAGAACGGCTTGTGAACGGGCGAAGAGGACGTTGTCCTCCAGC
ACGGAGGCATCCTTGGAGATTGATGCCCTGCACGAGGGCATTGACTTTTA
CTCGAAAATTTCGAGAGCGCGTTTCGAGGAGCTGAACATGGACCTCTTCC
GGTCCACCATGCAGCCCGTGGAGCGGGCACTGAGCGATGCCAAGATGGAC
AAGAAGGCCATTCATGATGTGGTCCTGGTGGGCGGCTCCACGCGTATTCC
CAAGATTCAGAAACTACTGCAAGATCTGTTTGGTGGCAAGCAGCTAAATC
TTTCAATCAATCCCGATGAGGCGGTGGCTTATGGAGCCGCCGTACAGGCT
GCCATTCTCACCGGCGTGGGCAGCTCACAGATCCAGGACCTGCTCCTCGT
GGACGTGGCTCCCCTTTCGCTGGGCATCGAGACCGCTGGCGGCGTGATGA
CCAACTTGGTGGAGCGCAATGCCCGCATTCCCTGCAAGCAGCAGCAGATC
TTCACCACCTACAGTGACAACCAGAATGCGGTGACCATTCAGGTGTACGA
GGGCGAGCGGGCCATGACCAAGGATAACAATCTACTGGGCACCTTTAACC
TCACCGGCATTCCGCCAGCTCCTCGGGGAGTGCCCCAGATCGAGGTGGCC
TTCGACTTGAATGCGGATGGCATCCTGAATGTGAATGCCAAGGACAACAG
CACCGGGAAGAGCGAAAAGATCACCATTTCCAACGACAAGGGCAGACTTT
CCAAGGCGGAAATCGATCGCATGCTCTCGGAGGCGGAGAAGTACAAGGTC
GAGGACGATCGTCAGAGGGAGCGGGTTCAGTCCAAGAACAATCTCGAGGC
ATACATATACGCATGTCGCCAGGCCGTCGATGACGCTCCATCCGGCGTTC
TTTCCGAAACCGAACGTTCCAAGGTGCGCGACAAGTGCTCCTCCGAGGCA
TCCTGGCTGGACAAGAACTCGCTGGCCGAGAAGGAGGAGTTCGAAAGTCA
CCTGAAAGAGTGCCAGCGCATCTGTACTCCGATAATGTCGAAAATCCATG
GCGGCAAAAAGGGCAAATCATCGATGGGCAAGGGTTCCCATCCCACTGTG
GAGGAGGTGGATGGATAGAAGCTTTCTAGACCAT
BS22976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70-2-RA | 1902 | CG7756-PA | 1..1902 | 17..1918 | 9345 | 99.4 | Plus |
| Hsp68-RA | 1908 | CG5436-PA | 7..1569 | 32..1594 | 1995 | 75.2 | Plus |
| Hsp70Ab-RA | 1929 | CG18743-PA | 16..1583 | 41..1608 | 1975 | 75.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70-2-RA | 2174 | CG7756-RA | 197..2098 | 17..1918 | 9345 | 99.4 | Plus |
| Hsp68-RA | 2231 | CG5436-RA | 213..1775 | 32..1594 | 1995 | 75.2 | Plus |
| Hsp70Ab-RA | 2375 | CG18743-RA | 254..1837 | 25..1608 | 1980 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13045581..13047312 | 187..1918 | 8510 | 99.4 | Plus |
| 3R | 32079331 | 3R | 24055536..24057098 | 1594..32 | 1995 | 75.2 | Minus |
| 3R | 32079331 | 3R | 11954707..11956290 | 1608..25 | 1980 | 75 | Minus |
| 3R | 32079331 | 3R | 11958788..11960371 | 25..1608 | 1980 | 75 | Plus |
| 3R | 32079331 | 3R | 12502751..12504334 | 25..1608 | 1845 | 74.4 | Plus |
| 3R | 32079331 | 3R | 12509317..12510900 | 25..1608 | 1845 | 74.4 | Plus |
| 3R | 32079331 | 3R | 12465975..12467558 | 1608..25 | 1830 | 74.4 | Minus |
| 3R | 32079331 | 3R | 12506034..12507617 | 25..1608 | 1830 | 74.4 | Plus |
| 3R | 32079331 | 3R | 15244390..15245934 | 47..1594 | 1600 | 73.7 | Plus |
| 3R | 32079331 | 3R | 13044955..13045131 | 17..193 | 870 | 99.4 | Plus |
| 3L | 28110227 | 3L | 13975916..13977176 | 221..1484 | 615 | 70.1 | Plus |
| 3L | 28110227 | 3L | 13974607..13974768 | 53..214 | 420 | 84 | Plus |
| X | 23542271 | X | 11803808..11804430 | 720..95 | 400 | 73.1 | Minus |
| X | 23542271 | X | 11802997..11803313 | 1537..1221 | 280 | 72.6 | Minus |
| 2R | 25286936 | 2R | 14254853..14254989 | 567..431 | 265 | 79.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:53:02 has no hits.
BS22976.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:55 Download gff for
BS22976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-2-RA | 197..2098 | 17..1918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:40 Download gff for
BS22976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-2-RA | 197..2098 | 17..1918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:06 Download gff for
BS22976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-2-RA | 197..2098 | 17..1918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:06 Download gff for
BS22976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13044955..13045128 | 17..190 | 99 | -> | Plus |
| 3R | 13045585..13047312 | 191..1918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:40 Download gff for
BS22976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8870677..8870850 | 17..190 | 99 | -> | Plus |
| arm_3R | 8871307..8873034 | 191..1918 | 99 | | Plus |
BS22976.pep Sequence
Translation from 16 to 1917
> BS22976.pep
MGKIPAIGIDLGTTYSCVGVWQNSKVEIIANDQGNRTTPSYVAFNETERL
IGDPAKNQVAMNAKNTVFDAKRLIGRKFDDKKIQEDLKLWPFKVINEKGK
PKIEVEFKGERKRFAPEEISSMVLTKMREIAEVYLGGKVKDAVVTVPAYF
NDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDL
GGGTFDVSVLSIDEGSLFEVKATAGDTHLGGEDFDNRLVNHFAEEFKRKH
KSDIKGNARALRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKISR
ARFEELNMDLFRSTMQPVERALSDAKMDKKAIHDVVLVGGSTRIPKIQKL
LQDLFGGKQLNLSINPDEAVAYGAAVQAAILTGVGSSQIQDLLLVDVAPL
SLGIETAGGVMTNLVERNARIPCKQQQIFTTYSDNQNAVTIQVYEGERAM
TKDNNLLGTFNLTGIPPAPRGVPQIEVAFDLNADGILNVNAKDNSTGKSE
KITISNDKGRLSKAEIDRMLSEAEKYKVEDDRQRERVQSKNNLEAYIYAC
RQAVDDAPSGVLSETERSKVRDKCSSEASWLDKNSLAEKEEFESHLKECQ
RICTPIMSKIHGGKKGKSSMGKGSHPTVEEVDG*
BS22976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70-2-PA | 633 | CG7756-PA | 1..633 | 1..633 | 3212 | 100 | Plus |
| Hsp70Ba-PA | 641 | CG31449-PA | 1..641 | 4..632 | 2455 | 74.6 | Plus |
| Hsp70Ab-PA | 642 | CG18743-PA | 1..642 | 4..632 | 2454 | 74.3 | Plus |
| Hsp70Aa-PA | 642 | CG31366-PA | 1..642 | 4..632 | 2454 | 74.3 | Plus |
| Hsp70Bc-PA | 641 | CG6489-PA | 1..641 | 4..632 | 2451 | 74.4 | Plus |
