BS22978.complete Sequence
380 bp assembled on 2011-02-02
GenBank Submission: KX803486
> BS22978.complete
GAAGTTATCAGTCGACATGGCAGTGCGCTACGAGCTGGCTATTGGCCTGA
ACAAGGGCCACAAGACCTCGAAGATCAGGAATGTGAAGTACACCGGCGAC
AAGAAGGTCAAGGGTCTGCGCGGATCGCGCTTGAAGAACATCCAAACCCG
CCACACCAAGTTCATGCGCGACTTGGTCCGCGAGGTCGTTGGCCACGCTC
CCTATGAGAAGCGCACCATGGAGTTGCTGAAGGTGTCCAAGGATAAGAGG
GCCCTGAAGTTCCTCAAGCGCCGCCTGGGCACCCACATCCGTGCCAAGAG
GAAGCGTGAGGAGTTGTCCAACATCCTCACCCAGCTGAGGAAGGCCCAGA
CCCACGCCAAGTAAAAGCTTTCTAGACCAT
BS22978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL36-RE | 348 | CG7622-PE | 1..348 | 17..364 | 1740 | 100 | Plus |
RpL36-RC | 348 | CG7622-PC | 1..348 | 17..364 | 1740 | 100 | Plus |
RpL36-RD | 348 | CG7622-PD | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL36-RE | 493 | CG7622-RE | 22..370 | 17..365 | 1745 | 100 | Plus |
RpL36-RC | 592 | CG7622-RC | 132..480 | 17..365 | 1745 | 100 | Plus |
RpL36-RD | 535 | CG7622-RD | 75..423 | 17..365 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 628461..628686 | 365..140 | 1130 | 100 | Minus |
X | 23542271 | X | 628751..628873 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:05:34 has no hits.
BS22978.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-02 09:57:14 Download gff for
BS22978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL36-RB | 88..433 | 17..362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:24 Download gff for
BS22978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL36-RB | 95..440 | 17..362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:57 Download gff for
BS22978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL36-RD | 75..420 | 17..362 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:57 Download gff for
BS22978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 628464..628686 | 140..362 | 100 | <- | Minus |
X | 628751..628873 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:24 Download gff for
BS22978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 522497..522719 | 140..362 | 100 | <- | Minus |
arm_X | 522784..522906 | 17..139 | 100 | | Minus |
BS22978.pep Sequence
Translation from 16 to 363
> BS22978.pep
MAVRYELAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFM
RDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREEL
SNILTQLRKAQTHAK*
BS22978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL36-PE | 115 | CG7622-PE | 1..115 | 1..115 | 578 | 100 | Plus |
RpL36-PC | 115 | CG7622-PC | 1..115 | 1..115 | 578 | 100 | Plus |
RpL36-PD | 115 | CG7622-PD | 1..115 | 1..115 | 578 | 100 | Plus |
RpL36-PB | 115 | CG7622-PB | 1..115 | 1..115 | 578 | 100 | Plus |
RpL36-PA | 115 | CG7622-PA | 1..115 | 1..115 | 578 | 100 | Plus |