Clone BS22978 Report

Search the DGRC for BS22978

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:229
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptRpL36-RA
Protein status:BS22978.pep: full length peptide match
Sequenced Size:380

Clone Sequence Records

BS22978.complete Sequence

380 bp assembled on 2011-02-02

GenBank Submission: KX803486

> BS22978.complete
GAAGTTATCAGTCGACATGGCAGTGCGCTACGAGCTGGCTATTGGCCTGA
ACAAGGGCCACAAGACCTCGAAGATCAGGAATGTGAAGTACACCGGCGAC
AAGAAGGTCAAGGGTCTGCGCGGATCGCGCTTGAAGAACATCCAAACCCG
CCACACCAAGTTCATGCGCGACTTGGTCCGCGAGGTCGTTGGCCACGCTC
CCTATGAGAAGCGCACCATGGAGTTGCTGAAGGTGTCCAAGGATAAGAGG
GCCCTGAAGTTCCTCAAGCGCCGCCTGGGCACCCACATCCGTGCCAAGAG
GAAGCGTGAGGAGTTGTCCAACATCCTCACCCAGCTGAGGAAGGCCCAGA
CCCACGCCAAGTAAAAGCTTTCTAGACCAT

BS22978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36-RE 348 CG7622-PE 1..348 17..364 1740 100 Plus
RpL36-RC 348 CG7622-PC 1..348 17..364 1740 100 Plus
RpL36-RD 348 CG7622-PD 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36-RE 493 CG7622-RE 22..370 17..365 1745 100 Plus
RpL36-RC 592 CG7622-RC 132..480 17..365 1745 100 Plus
RpL36-RD 535 CG7622-RD 75..423 17..365 1745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 628461..628686 365..140 1130 100 Minus
X 23542271 X 628751..628873 139..17 615 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:05:34 has no hits.

BS22978.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-02 09:57:14 Download gff for BS22978.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36-RB 88..433 17..362 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:24 Download gff for BS22978.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36-RB 95..440 17..362 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:57 Download gff for BS22978.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36-RD 75..420 17..362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:57 Download gff for BS22978.complete
Subject Subject Range Query Range Percent Splice Strand
X 628464..628686 140..362 100 <- Minus
X 628751..628873 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:24 Download gff for BS22978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 522497..522719 140..362 100 <- Minus
arm_X 522784..522906 17..139 100   Minus

BS22978.pep Sequence

Translation from 16 to 363

> BS22978.pep
MAVRYELAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFM
RDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREEL
SNILTQLRKAQTHAK*

BS22978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36-PE 115 CG7622-PE 1..115 1..115 578 100 Plus
RpL36-PC 115 CG7622-PC 1..115 1..115 578 100 Plus
RpL36-PD 115 CG7622-PD 1..115 1..115 578 100 Plus
RpL36-PB 115 CG7622-PB 1..115 1..115 578 100 Plus
RpL36-PA 115 CG7622-PA 1..115 1..115 578 100 Plus