BS22979.complete Sequence
3425 bp assembled on 2011-02-15
GenBank Submission: KX801525
> BS22979.complete
GAAGTTATCAGTCGACATGAGTTTTCCCAGAACTAACAGCAGGAAATCGC
CGTTAAAAAGAAAGCGACTTAGACCATGTCATCTTGACTATGCTAACGAA
CGCCTATGGGAACACAGTTACTTGAGGGAAAAATGCAAGGAGCTAAATTT
GGAGGAGGAGTATAGGTACTACCAGGTCCGTCTGATGGTCAGCAACCTCA
CAATTTTTTACGTATTGTTTATAATTCTGGCCATGAGCTTTTTGACAATC
GAGTTGCTTTACGTACAGCACTATAACGCCGTATTCTTTAACTTCGTTAT
CAGAGTAGTAAGCACTATCCTGGTTTTAACCGTGTTGAGCATCAATTTTT
GCGAAAAATTTGTCAGTCGCCACCGATGGGTCATGATAGCCAGCTCAGTG
CTATCGGTATATCTAGTGGTACTCACAGATATTGTTATGATCTCGTATCA
CTTTTACAAGAACGACTGGCCCCTTAATACCTCATTCGATGTCTTCACAC
TCTGCATGATCTACATGTTCCTGCCAATTCCCTCGATCAAGGGAGCTGCC
CTTTTGGCATCCTCAGTCAGTCTTATATATGTGGCCTTTTTTATGCACTC
GCTCACTTTCAACGCGGTGTACACTGATCGCGATAGTTTCGGCTACGATG
TGATATCCACTGATATATTACACAACCTGGGTTTTAACATGATGGGCATC
TTTTTCCGCATTATGAACGACACCATGGTGCGCGCATCCTTCTTGGACCG
CCATCAGTTCATCATGGAGGAGACTTGGTTGCGTCATGCCTTGCTACAGG
AATCGATACTCTTGGACAGCATACTACCGCCTCAAATTGCGAAACCCGTT
CAGGAAAAAATCAAGAGCAAAATAACCCAGTCCGAGAACAGCCCCGACCG
CTTTCAAATGGGTCCGCGAACGACAGAATCCTTCATGGCCATACAAATTC
ATCCTGATGTCTCTATCCTGTATGCAGACGTGGTGAACTACACTCACTTG
ACAACGACATTGACCGTGGGAAACCTGGTGAAGGTCCTGCACGACCTCTA
CGGCAGATTCGATATCGCTGCCTCCAACTTTAAAGTGCAGCGCATCAAGT
TCCTGGGAGATTGCTACTACTGTGTGGCGGGTTTGACTACTCCGGATCCA
GATCACGCGAAGTGTTGCGTGTCTTTGGGCATATCCATGATTTCCAACAT
CCAGGAAGTTCGGGCTGAACGTGGATTGGATATCGACATGCGCATAGGTG
TTCATTCGGGCTCTCTTCTCGCTGGCATCATCGGCGAGGCCAAGCTGCAA
TTTGACATATGGGGAACGGACGTGGAGATCGCCAATCATCTGGAGTCTAC
TGGGGAACCAGGTTACGTTCACGTAAGTGGACGCACCCTAAGTATGCTAA
ATCCAGCGGATTATACTATATTAAGTGGTACGCAAAAGGCTCAAAGCGAT
CCAGTGTTGCAGTACATACACACCTATCTACTTACTGGTCAAGTGGCCCG
CGAGTCATTTATAACTTCGATTGGTGGAGTTAGATCCAGTTCCGTTCTTG
AAGTAAAGTCCATCGATCGGATCCGGTCAAGCAGGCCAAGTCAATCATCA
ATGACCGATGAGTTCCGAGAAGAGTTCCGGAATATGCCAGTTGGTGGCAT
TAACTTAAACTCACCCTGCTGCCGACGAACTAGATTGGACACTCATAAGA
AAACCCAGCGGGAGATTGGCATTTTTTGTGCGGCGTTCAAGGACTCTTCC
CTGGAATGGAACTACCTGCACCAGCCGGACTTCATCTTCAAGTCCTCAAT
GCTGCTGGCCTGGGGAATCGGGTGCTGCTTGATCTATATCCAGATAGTGA
CCAACAACTTTTCGTGCACTGCATGCATTGTGGTCGACTTGGTAACTTTC
TTCTTTCTGACTTCCTTGCTGTGCCTCGCGTGGTACAAAAACGTTTGTTG
GTGGAAAAGTGGGCGCTACGAGTTCAGAATCTATGGAAAATACAGCTGCA
TGGCGTTTCATATTTTTGAAAAGATCCAACACAGTGTGTCCCTGCGCATT
ACTGTCTATCTGGGGATCTTATTTTCCTACTATGCTGTGATTTCCCTGAT
AATGTTAAACTGTGACCGCGACATGTATGAGTTGAGTTACATTGAGAGCA
AGATCTATCACTACGAAATGGATCGGGATACATGTTTCCATCCCTGGGTC
TTCACAAACATGATTTCCCTGATCCTGGGCATAAGCTACACCTTCGCCCG
AATTCCATTTGGCCTCAAGATAGTGATCAGCTGCTGCGAGACACTTGCCT
ACTTGTTAATCGTATTCTTCCAGTTCGCATTCATTTTCCAGCACAGTGCC
ACCACAACTCCCTTTATGAAGGCGGAACTAGCTCATTGTCTTCGAGTGTG
CATGATGTTACTCACGATGTACGCAAAGGAGCGTCAGTCAGAATTTAATA
CTAAAATGAACTATAAGCTTAATGTGGACTTGCAAAACAAGCAAAAAGCG
GCAGATTTAACAAACCAATCCATCATAATCCTGCTCAATAACATACTCCC
TTCTCATGTTGTTGACCTCTATCTCAATTCATTGGCCAAACACGAGCTCT
ACTATGAAAACTATCGAATGGTATCAGTCATGTTTGCCATGCTCATCAAT
TTTCCCATGAACTTGCCAAGCCTCCGGGTGCTTAACGATATCATAACACA
GTTCGATAGACTGTTGACTGCTTACAGGGAATATTACGTAGTCGAGAAGA
TCAAAGTCGTGGGCTGCACTTATATGGCGGCCTGTGGATTGGACTTTAAC
CTGGCGTCAAACATCCGCCAAACGGACCACTTTCGCAATAGTTCCCTACA
TGTTGAGGTGGAACACGCACGTAATCATCGTATGACCGACGAAAACTACG
ACAGCGATATGAACAATGATGAAGTGGTCTTCATAATGACCACCTTCGCC
CTGGACCTGATGCGAACTCTAGCAGCATGCAACCGGGCGTACTCAAGCTC
ATTTTTCGAGCGGTCCTTGTCCCAGGGGAAGATCTGCATCGGTATCTCCA
GCGGTGAGATAATGGCCGGCGTGGTGGGAGCTTCTCAGCCGCACTACGAC
ATATGGGGAAACCCTGTGAATATGGCTTCTCGAATGGAATCGACAGGGCT
GCCTGGACACATCCAGGTGACGGAGGAGTCAGCGAAAATTCTTCAGGAGT
TTGACATTAAATGTATATACCGCGGCATGACCTTCGTGAAGGGTCGTGGT
GACATACCCACCTATTTTGTGGGCATTGACGAGAACCTTAAATTTATGTC
CGCAAAATTGGTAAATCGTAGTTTGTCAAGACGTTTCTCAGTTATGTCTT
CACTAGATCCGGATAGCCTTAGGAAGAGTTCGTCTAGTGATCAAGAATCT
GGCGAATAAAAGCTTTCTAGACCAT
BS22979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ACXC-RA | 3393 | CG5983-PA | 1..3393 | 17..3409 | 16905 | 99.9 | Plus |
| ACXC-RB | 1311 | CG5983-PB | 1..1298 | 17..1314 | 6445 | 99.8 | Plus |
| ACXB-RA | 3345 | CG17174-PA | 2107..2765 | 2147..2805 | 1675 | 83.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ACXC-RA | 3505 | CG5983-RA | 59..3452 | 16..3409 | 16910 | 99.9 | Plus |
| ACXC-RB | 3564 | CG5983-RB | 1415..3511 | 1313..3409 | 10470 | 100 | Plus |
| ACXC-RB | 3564 | CG5983-RB | 59..1357 | 16..1314 | 6450 | 99.8 | Plus |
| ACXB-RA | 3557 | CG17174-RA | 2209..2867 | 2147..2805 | 1675 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12913164..12913951 | 426..1213 | 3895 | 99.6 | Plus |
| 2L | 23513712 | 2L | 12916170..12916721 | 2858..3409 | 2760 | 100 | Plus |
| 2L | 23513712 | 2L | 12914623..12915073 | 1654..2104 | 2255 | 100 | Plus |
| 2L | 23513712 | 2L | 12915123..12915486 | 2104..2467 | 1820 | 100 | Plus |
| 2L | 23513712 | 2L | 12914172..12914512 | 1313..1653 | 1690 | 99.7 | Plus |
| 2L | 23513712 | 2L | 12919411..12919731 | 2147..2467 | 930 | 86 | Plus |
| 2L | 23513712 | 2L | 12912942..12913104 | 266..428 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 12915702..12915858 | 2561..2717 | 770 | 99.4 | Plus |
| 2L | 23513712 | 2L | 12920528..12920804 | 3030..3306 | 740 | 84.5 | Plus |
| 2L | 23513712 | 2L | 12915912..12916057 | 2713..2858 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 12912747..12912888 | 127..268 | 710 | 100 | Plus |
| 2L | 23513712 | 2L | 12921810..12922477 | 465..1135 | 635 | 73.3 | Plus |
| 2L | 23513712 | 2L | 12926750..12926973 | 935..1158 | 610 | 84.8 | Plus |
| 2L | 23513712 | 2L | 12917697..12918167 | 665..1135 | 585 | 74.9 | Plus |
| 2L | 23513712 | 2L | 12912588..12912700 | 16..128 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 12914012..12914114 | 1212..1314 | 515 | 100 | Plus |
| 2L | 23513712 | 2L | 12929362..12929616 | 3037..3291 | 510 | 80 | Plus |
| 2L | 23513712 | 2L | 12924802..12925192 | 2911..3301 | 500 | 75.2 | Plus |
| 2L | 23513712 | 2L | 12915543..12915637 | 2467..2561 | 475 | 100 | Plus |
| 2L | 23513712 | 2L | 12923805..12924128 | 2144..2467 | 465 | 76.2 | Plus |
| 2L | 23513712 | 2L | 12919957..12920100 | 2570..2713 | 345 | 82.6 | Plus |
| 2L | 23513712 | 2L | 12924367..12924492 | 2585..2710 | 330 | 84.1 | Plus |
| 2L | 23513712 | 2L | 12924548..12924633 | 2718..2803 | 325 | 91.9 | Plus |
| 2L | 23513712 | 2L | 12917497..12917605 | 465..573 | 290 | 84.4 | Plus |
| 2L | 23513712 | 2L | 12924193..12924279 | 2475..2561 | 285 | 88.5 | Plus |
| 2L | 23513712 | 2L | 12918919..12919049 | 1718..1848 | 280 | 80.9 | Plus |
| 2L | 23513712 | 2L | 12920160..12920246 | 2719..2805 | 270 | 87.4 | Plus |
| 2L | 23513712 | 2L | 12928786..12928869 | 2570..2653 | 255 | 86.9 | Plus |
| 2L | 23513712 | 2L | 12927132..12927208 | 1238..1314 | 190 | 83.1 | Plus |
| 2L | 23513712 | 2L | 12926522..12926610 | 695..783 | 190 | 80.9 | Plus |
Blast to na_te.dros performed 2014-11-27 06:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 5995..6045 | 2114..2065 | 135 | 76.5 | Minus |
BS22979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:56 Download gff for
BS22979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXC-RA | 60..3450 | 17..3407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:23 Download gff for
BS22979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXC-RA | 60..3450 | 17..3407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:37 Download gff for
BS22979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXC-RA | 60..3450 | 17..3407 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:37 Download gff for
BS22979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12912589..12912699 | 17..127 | 100 | -> | Plus |
| 2L | 12912748..12912888 | 128..268 | 100 | -> | Plus |
| 2L | 12912945..12913104 | 269..428 | 100 | -> | Plus |
| 2L | 12913167..12913950 | 429..1212 | 99 | -> | Plus |
| 2L | 12914013..12914113 | 1213..1313 | 100 | -> | Plus |
| 2L | 12914173..12914512 | 1314..1653 | 99 | -> | Plus |
| 2L | 12914623..12915073 | 1654..2104 | 100 | -> | Plus |
| 2L | 12915124..12915485 | 2105..2466 | 100 | -> | Plus |
| 2L | 12915543..12915637 | 2467..2561 | 100 | -> | Plus |
| 2L | 12915703..12915854 | 2562..2713 | 100 | -> | Plus |
| 2L | 12915913..12916057 | 2714..2858 | 100 | -> | Plus |
| 2L | 12916171..12916719 | 2859..3407 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:23 Download gff for
BS22979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12912589..12912699 | 17..127 | 100 | -> | Plus |
| arm_2L | 12912748..12912888 | 128..268 | 100 | -> | Plus |
| arm_2L | 12912945..12913104 | 269..428 | 100 | -> | Plus |
| arm_2L | 12913167..12913950 | 429..1212 | 99 | -> | Plus |
| arm_2L | 12914013..12914113 | 1213..1313 | 100 | -> | Plus |
| arm_2L | 12914173..12914512 | 1314..1653 | 99 | -> | Plus |
| arm_2L | 12914623..12915073 | 1654..2104 | 100 | -> | Plus |
| arm_2L | 12915124..12915485 | 2105..2466 | 100 | -> | Plus |
| arm_2L | 12915543..12915637 | 2467..2561 | 100 | -> | Plus |
| arm_2L | 12915703..12915854 | 2562..2713 | 100 | -> | Plus |
| arm_2L | 12915913..12916057 | 2714..2858 | 100 | -> | Plus |
| arm_2L | 12916171..12916719 | 2859..3407 | 100 | | Plus |
BS22979.pep Sequence
Translation from 16 to 3408
> BS22979.pep
MSFPRTNSRKSPLKRKRLRPCHLDYANERLWEHSYLREKCKELNLEEEYR
YYQVRLMVSNLTIFYVLFIILAMSFLTIELLYVQHYNAVFFNFVIRVVST
ILVLTVLSINFCEKFVSRHRWVMIASSVLSVYLVVLTDIVMISYHFYKND
WPLNTSFDVFTLCMIYMFLPIPSIKGAALLASSVSLIYVAFFMHSLTFNA
VYTDRDSFGYDVISTDILHNLGFNMMGIFFRIMNDTMVRASFLDRHQFIM
EETWLRHALLQESILLDSILPPQIAKPVQEKIKSKITQSENSPDRFQMGP
RTTESFMAIQIHPDVSILYADVVNYTHLTTTLTVGNLVKVLHDLYGRFDI
AASNFKVQRIKFLGDCYYCVAGLTTPDPDHAKCCVSLGISMISNIQEVRA
ERGLDIDMRIGVHSGSLLAGIIGEAKLQFDIWGTDVEIANHLESTGEPGY
VHVSGRTLSMLNPADYTILSGTQKAQSDPVLQYIHTYLLTGQVARESFIT
SIGGVRSSSVLEVKSIDRIRSSRPSQSSMTDEFREEFRNMPVGGINLNSP
CCRRTRLDTHKKTQREIGIFCAAFKDSSLEWNYLHQPDFIFKSSMLLAWG
IGCCLIYIQIVTNNFSCTACIVVDLVTFFFLTSLLCLAWYKNVCWWKSGR
YEFRIYGKYSCMAFHIFEKIQHSVSLRITVYLGILFSYYAVISLIMLNCD
RDMYELSYIESKIYHYEMDRDTCFHPWVFTNMISLILGISYTFARIPFGL
KIVISCCETLAYLLIVFFQFAFIFQHSATTTPFMKAELAHCLRVCMMLLT
MYAKERQSEFNTKMNYKLNVDLQNKQKAADLTNQSIIILLNNILPSHVVD
LYLNSLAKHELYYENYRMVSVMFAMLINFPMNLPSLRVLNDIITQFDRLL
TAYREYYVVEKIKVVGCTYMAACGLDFNLASNIRQTDHFRNSSLHVEVEH
ARNHRMTDENYDSDMNNDEVVFIMTTFALDLMRTLAACNRAYSSSFFERS
LSQGKICIGISSGEIMAGVVGASQPHYDIWGNPVNMASRMESTGLPGHIQ
VTEESAKILQEFDIKCIYRGMTFVKGRGDIPTYFVGIDENLKFMSAKLVN
RSLSRRFSVMSSLDPDSLRKSSSSDQESGE*
BS22979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ACXC-PA | 1130 | CG5983-PA | 1..1130 | 1..1130 | 5888 | 100 | Plus |
| ACXB-PA | 1114 | CG17174-PA | 10..1112 | 19..1125 | 3795 | 65.2 | Plus |
| ACXA-PA | 1112 | CG17176-PA | 3..1093 | 5..1098 | 3643 | 63.7 | Plus |
| ACXA-PC | 1107 | CG17176-PC | 3..1088 | 5..1098 | 3609 | 63.4 | Plus |
| ACXE-PB | 1123 | CG17178-PB | 3..1099 | 16..1113 | 2828 | 50.7 | Plus |
