Clone BS22980 Report

Search the DGRC for BS22980

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:229
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG12907-RA
Protein status:BS22980.pep: full length peptide match
Sequenced Size:506

Clone Sequence Records

BS22980.complete Sequence

506 bp assembled on 2011-02-02

GenBank Submission: KX803498

> BS22980.complete
GAAGTTATCAGTCGACATGCTGTCCTCCGCCACCGCCTCCCTGTCGCCCG
CCGCCCACCTTGTGGCAGAAATTGAACTGCGTTCCGTGCAACCGTTTTGT
GTTCTTCATGATCGGGGCGGGCATCGGATTATTCTGGGACCATATGAAGA
AGGAGGCCCAGAAGGCGGCCGAGGAGGCCGCGAAATCGCCCAAGGAGAAG
GAGAAGGAGGCCAAGGAGCGCGAGAAGAAGCAGAAGGAAAAAGAGAAGGC
CGAAAAGGAGAAGGCGGAGAAGGAGAAGAAGGAGAGGGAGAAGAAGGAGA
AGGAAAAGAAGGAGAAGGAAAAGAAGGAGAAGGAGGCCAAGGGCAAAGAG
AAGGGCAAGGAGGGCAAGTAACGACTATAGACCCCCAAACGGACATGTCA
AGGAGCAGGATGTTTTCCCCCAAAATTCTCATCGAATCCATATCGTTTCT
AAACTTCAAAATTTTCAAGTGCATTATATGGCATACCTAAAAGCTTTCTA
GACCAT

BS22980.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12907-RB 474 CG12907-PB 1..474 17..490 2370 100 Plus
CG12907-RA 474 CG12907-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12907-RB 1014 CG12907-RB 181..654 17..490 2370 100 Plus
CG12907-RA 945 CG12907-RA 181..654 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10353551..10354024 17..490 2370 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:05:44 has no hits.

BS22980.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-02 09:57:14 Download gff for BS22980.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 184..655 17..488 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:30 Download gff for BS22980.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 184..655 17..488 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:01 Download gff for BS22980.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 181..652 17..488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:01 Download gff for BS22980.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10353551..10354022 17..488 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:30 Download gff for BS22980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6241056..6241527 17..488 100   Plus

BS22980.pep Sequence

Translation from 16 to 489

> BS22980.pep
MLSSATASLSPAAHLVAEIELRSVQPFCVLHDRGGHRIILGPYEEGGPEG
GRGGREIAQGEGEGGQGAREEAEGKREGRKGEGGEGEEGEGEEGEGKEGE
GKEGEGGQGQREGQGGQVTTIDPQTDMSRSRMFSPKILIESISFLNFKIF
KCIIWHT*

BS22980.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12907-PB 157 CG12907-PB 1..157 1..157 826 100 Plus
CG12907-PA 157 CG12907-PA 1..157 1..157 826 100 Plus