BS22982.complete Sequence
2681 bp assembled on 2011-02-15
GenBank Submission: KX805781
> BS22982.complete
GAAGTTATCAGTCGACATGATGCTCACATCCATAAACAACTCCTTTGAGC
AGGACACCCACGATGCGGACGCCAACTGCGACGGGCCCGACCTGGACTTC
GTGTACGCGGACGTGGATGGCTATCAGAACGAGATCGCTGAACTGTATAG
CTACACGGAGTTCAGCGAGTTTCAGATGAACGTGAAGGCCTTCGAGGACC
AGATGGAGCTGTACGACCTGCCGCCCAACTGGCAGAAGCAGGACTCCGCC
TCCCAGCGCGGCATCGTGATGAAGCTGGTGGACCAGCTGGAGGTCTCCGA
TCGATCCTTTCGCATGCAGGCCGCCCGGTGCATCCTTTACCTGGCCCAAG
GCTGCTGGGCGGAGGTTCAGTCGGACGAGGAGCAGCACCAGATCACCAGG
GACAATGTGCTGGTGCTCTACCAACTCGGCGTCTTCGCCTCCTTCATCGA
CCTGCTCAACATGGAGATCGAAAGCGCCTGCTCTCCGGACATTGTGGCCG
TCAAGATCACTAACGTCACGCTTGTGGACTCCACGGACATTCGGGTGATC
CTATCTGTGCTCTACATCATCACAGAAACGATTCGCGATGAAAAGGAAAA
GGGCAGCGAAGACTACAGAGAGCTGGCCGACTCCTTTGTGCAAGAAATCA
ACTCACCACTACCAGATGGCGAACTTCTGGCCGTCAAGCTGTTGGGCATG
ATCACACGGTTTTGCAGTGGCGCAGCACCGCAGTTCCCCATGAAGAAGGT
TGTCCTCCTGCTGTGGAAAGTTTCGCTGCTGGGACTGGGAGGCATGGATG
TGCTCAAGAATCTCAAGAACGAGTATCGATTGAAGGTGGGTTTGGAACCC
ATCACCGAGGACACGCTGGAGGTTACCAAGTGCATGCGAGCCAGCTCACC
GCCGGCCACAGCTACTGATATACTGGAGAACCAGTATCCCAAGCGGAACT
TCAAACGCTCCCTGATGAAGCAGCGTTTTTTGGACGAGCCCGAGCAGATA
GACATGGAGATGGGCGGCAACGAGGGTCAAAATAATGCCAACAATGGCAG
CGGCAATGGCGGAAACGGGGAGGAGGAACTCTCTCAGTACTACAGACCCT
ACGATGACCCCTCTTCGTCCGCATCCACCACCTCGACGGCAAATCCAAAC
AACCAGCCTAGCCTAACACAGCCACCCGCTGCTGTGCCTCCGGTACAGAT
CACGGCTCGCCTGCCCTGGACGCCCAAGGTGCGACAAAAGGACATTGACC
AGTTTCTGGACATTTCGCGGAATAAGTTCATCGGGTATTCGCTGATTGGT
GACCACGAGAGTCTGGCTGGACTGCCGCAACCCATTCACGAGGGCTTTAA
GACGCTGCAGCGGCACATGTATATGAGCCTGGCCGATGTGCAAATCAAGA
AGGAGGAGGACATAGCTAGGAACCCCATTTCCACGCACGAAGACGAAATC
AAACTGACCCCGGCTGAGGTGTTGTACCAAGCCATCCTGCCAAACCTGCC
GCAGTATATGATCGCCCTCCTTAAGGTCCTGCTGGCAGCTTCGCCAACGT
CCAAGTCCAAGACGGAGAGCATTAACATAATGGCCGATGTGCTGCCTAGG
AAGATGCCGCTGACGGCCACCCAATCAACAAAGCTAACCGTCGACATTGG
TCGGCACAAGGAGATCATTGTGAAGGCTGTCTCGGCCATCATCCTGCTAT
ATTTAAAGCATTTCAAGATAAACCATGTTTACCAGTTTGAGTTCATGTCG
CAGCATCTCGTGTTCGCCAACTGCATCCCGCTGGTTTTGAAGTTCTTCAA
TCAGACAATCACGGAGTACGTGAACACCAAGAACTCCATTCCTCTGCTCG
ATTTCCCGTCGTGTGTGATTGGTGAGCAACCGGATTTGAGTGGCGATAGC
TTTGTGTATGGCGGAGAGATGTCCGATAAGTCCTACTCTTGGCGGAACGT
GTTCTCCTGCATAAACCTGCTGCGCATCCTCAACAAGCTGATCAAGTGGA
AGCACTCGCGAGTGATGATGCTGGTGGTATTCAAGTCGGCACCAATCCTG
AAGAAGACGCTTAAGGTGCGCCACGCCATGATGCAGCTGTACGTGCTGAA
GCTGCTCAAGATGCAGACCAAGTACTTGGGCCGCCAGTGGCGGAAGTCCA
ATATGAAGACCATGAGTGCAATTTACGCCAAGGTGCGGCATCGTCTAAAC
GACGATTGGGCCTTTGGCAACGACTTGGAGTCGCGTCCCTGGGACTTCCA
GGCGGAGGAGTGTACGCTGCGGGCCTGCGTGGATCGATTCAACCTGCGAC
GCTATCCGGAAGCCACCCAGAAGTGTGGAAACAACGGCACGGCAGCTCAG
AATGCGGAGAACGCCCAGCAATCCAACATGATGGCGGGCAACAATGGATG
TGGCAATAATGGCGACGCAAATGGCTATGGAAACAACGGTGGCGGTGGCA
ATGGCGGCCACAACCAGCAGCAGCAGCTCAACGACTATGGTGTGGAGGGT
GGCTTTCCCAGCGACGAGATCCTTACCCACTCGGACTTTGCCTTCTTCGG
TCACTCGGGTTGGTGGGATCGCAAGGTCGAGCTGACGGATTACTTCAAGG
CCAATTACGCGGTCTGGCTGGAGGAGGAGGTCTACAACAGTCAGACCGAC
TGGGACGCCCTCTAGAAGCTTTCTAGACCAT
BS22982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strip-RC | 2649 | CG11526-PC | 1..2649 | 17..2665 | 13095 | 99.6 | Plus |
| Strip-RA | 2649 | CG11526-PA | 1..2649 | 17..2665 | 13095 | 99.6 | Plus |
| Strip-RB | 2784 | CG11526-PB | 171..2784 | 52..2665 | 12920 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strip-RC | 3792 | CG11526-RC | 310..2958 | 17..2665 | 13095 | 99.6 | Plus |
| Strip-RA | 3596 | CG11526-RA | 573..3221 | 17..2665 | 13095 | 99.6 | Plus |
| Strip-RB | 3161 | CG11526-RB | 173..2786 | 52..2665 | 12920 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3322926..3324636 | 2665..955 | 8405 | 99.4 | Minus |
| 3L | 28110227 | 3L | 3324700..3325637 | 954..17 | 4690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:08:00 has no hits.
BS22982.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:52 Download gff for
BS22982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RA | 573..3221 | 17..2665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:13 Download gff for
BS22982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RA | 573..3221 | 17..2665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:03 Download gff for
BS22982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strip-RA | 573..3221 | 17..2665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:03 Download gff for
BS22982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3322926..3324636 | 955..2665 | 99 | <- | Minus |
| 3L | 3324700..3325637 | 17..954 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:13 Download gff for
BS22982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3322926..3324636 | 955..2665 | 99 | <- | Minus |
| arm_3L | 3324700..3325637 | 17..954 | 100 | | Minus |
BS22982.pep Sequence
Translation from 16 to 2664
> BS22982.pep
MMLTSINNSFEQDTHDADANCDGPDLDFVYADVDGYQNEIAELYSYTEFS
EFQMNVKAFEDQMELYDLPPNWQKQDSASQRGIVMKLVDQLEVSDRSFRM
QAARCILYLAQGCWAEVQSDEEQHQITRDNVLVLYQLGVFASFIDLLNME
IESACSPDIVAVKITNVTLVDSTDIRVILSVLYIITETIRDEKEKGSEDY
RELADSFVQEINSPLPDGELLAVKLLGMITRFCSGAAPQFPMKKVVLLLW
KVSLLGLGGMDVLKNLKNEYRLKVGLEPITEDTLEVTKCMRASSPPATAT
DILENQYPKRNFKRSLMKQRFLDEPEQIDMEMGGNEGQNNANNGSGNGGN
GEEELSQYYRPYDDPSSSASTTSTANPNNQPSLTQPPAAVPPVQITARLP
WTPKVRQKDIDQFLDISRNKFIGYSLIGDHESLAGLPQPIHEGFKTLQRH
MYMSLADVQIKKEEDIARNPISTHEDEIKLTPAEVLYQAILPNLPQYMIA
LLKVLLAASPTSKSKTESINIMADVLPRKMPLTATQSTKLTVDIGRHKEI
IVKAVSAIILLYLKHFKINHVYQFEFMSQHLVFANCIPLVLKFFNQTITE
YVNTKNSIPLLDFPSCVIGEQPDLSGDSFVYGGEMSDKSYSWRNVFSCIN
LLRILNKLIKWKHSRVMMLVVFKSAPILKKTLKVRHAMMQLYVLKLLKMQ
TKYLGRQWRKSNMKTMSAIYAKVRHRLNDDWAFGNDLESRPWDFQAEECT
LRACVDRFNLRRYPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGD
ANGYGNNGGGGNGGHNQQQQLNDYGVEGGFPSDEILTHSDFAFFGHSGWW
DRKVELTDYFKANYAVWLEEEVYNSQTDWDAL*
BS22982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strip-PC | 882 | CG11526-PC | 1..882 | 1..882 | 4625 | 100 | Plus |
| Strip-PA | 882 | CG11526-PA | 1..882 | 1..882 | 4625 | 100 | Plus |
| Strip-PB | 927 | CG11526-PB | 54..927 | 9..882 | 4570 | 99.7 | Plus |
