BS22983.complete Sequence
3548 bp assembled on 2011-02-15
GenBank Submission: KX803488
> BS22983.complete
GAAGTTATCAGTCGACATGGACGAAGCCAACAAGGAGGATGTGAAGCGAG
CCTCTCTTTCCAACAGCACGGTGACGATAAGGCCGCGCCTGATCTACGGA
CTGCGGTCGGATGTCATTGGCAACATCCACTTCAACCTGACCAAGGAGGT
CATCTATCCGGTGGAGGGAGTTCTAGCGTTCCACGACTACGTCCAAAACA
AGCAAAGGTTTCTCAGGCTGCCGGAGGATACGCGACCCGAGGTGATATCC
ATAAGTTCGCATCGCAAACTACTGGCGGTGGTGGAAAGGCACTCGAAAAA
TGGTCGGTATATATCCATTTATGAGTTGGCCACCCTGAAGAAGCGACGTC
ACTTGGAGCTGCCGAGCAACCATCGCAATGCGGAGATACAGCAGATGATC
TTTACCAATGACTCCAGATCGGTGGCCCTGATCACCCGCCCGCCGGAGGA
AACCCTTATTATGTTGGTGCTGGACAAGACAAGCACAGTGATCGAGGGCA
GGGCCACAATCCCGGGATCTCATGGAGGCGCCGAGTGCATCGCTGGCAAT
CCAAACGATTGCAATTTTATGGCGGTCGGAGGCGAGCGCACGTTGTTGCT
GATGAGTAAATCGGAGCGAGGGTTTAGTATCAGCAATAATCTGAAGGTGA
AATATAGGGTCACCTCGATGGCTTTTCTATCGCTGGACCTGCTGATGATT
GGTACATCGGATGATCAGTTGATCCTGGTGGAGAACGGCGAGCAGAAGTT
GGCTCAAAAGGCGAGCGATGCGGACACTGTGGACTTGATGATCGATCAGG
AGGTGTTCGATCGGGACAAGGAGTTGCAGGAACAGCGTTTCCTGCCCACG
CAGGCGGTTAGCCTTCCTGACAGGAGAGTCCTCTGCATGACCGCCTTCCC
CAAGGGATTCGCCTACATCATCTTCAATCGGGCCTTCGTCTTCGAGCGCG
TTTCCAAGTTCAAGTTCGAGAGAAAAACCATCCTTACGGTGCCCACGAAT
CTGTATGCCGAGCATATGTACCAGATTCTAAATCTGGCCATCGACCACAA
ACAGGAAACGGTGATAGTGACCACATCCCATTGTCAGATTTATGTGGGAA
TTCTCATTGTTCCCGAGACCCTGAAGACCAAGCAGCTGAAGTTTGAGCCG
CTGGGAGTCCTCATCCACACTGGAGAGATCATCGCCATGTCTGTGTGCGC
CTGGAAACCGATCATCATGACTGCCTCCAGGGATCAGACCATCCGGATTT
GGAACTATGAGACCGCCTTGGTGGAGCTGGTTCGCAAATTCCAGGTGGAT
GTCAACATTGTGGAGCTGAGCTTAACGGGACAGATGGCGGCCATCGGCTT
CTCGGATCAGCTGCGTATTACCCAGATCTTCATGGATGATCTAAACATTG
TCAAGACGTACAACTTTCCGCACTGCAACGCGGTGCGGTATTCCAATTTT
GGTCACATGATGGCTGCCGCCTATGACAACAACATAGCCATTACCTCAGT
GTACAAGCTGGATGTGCTGATCAATCTGAAAGGCCACAATGGAATTGTGC
TTTCCGTGGCGTGGTCGAGGACGGACAAGTTTCTAATCTCTGGCGGAGCA
GAGGGTGCCATCTATCTGTGGGACATTGAGACAGGCGCCCGACTGCAGGA
GATCGTCCAGAAGGGCACCGAATACGTGACCATCTCCTGCAGCACCAACG
ATCCGCTGACGATCTACGCGGGAACCAGTATCGGAACGATCCGCGAGTTC
CAGGACTCCACGCTGATGAGAGAGATAACCATTCCATCGAGGACCAAGGG
ATCCGTATCCGATGTTTGCCTGGCCAGATCGGACCTGATTATGTTTGTGG
CCGATCATGAGGGTAACCTTTTCAATATGCAATTGCCGTTCCTGGAGGCC
GGAGGTGGAACCTTCACCAACTTTCGGTTCTTCGATGGACCGGTAAACAA
ACTTCGCTTCTCCTACGATGGCACACTGCTGTTTGCGATATCCAACAAGG
GAACGCTCGCCATTTGGGCCATGGACAACATCGAGGGCAAGGTGCCCTAC
ATGGATCAGGATCTGATGCGCAGCCAGGAGGTGCTCATACCGCGCAGCCA
ACTCAACGACAAAATCGAGCAGATTGCCAACCTGGAGTTGCGGTTGAAGC
AGCAGGCGGAGGAGTTCCAGTATCAGTTGAGCCAGAACGAGATTTTTGAC
GGCCAGCAGCTGCAGGAGGTGCACAGGAGCTACTGCTCGGCACTGGAGGA
GCTAAAGGAGTTGAACAACGAGATCGAGGCCAGGCACACGGAGGAGATGA
ATCACATTACGTTCCAAATCAACTCGATACGGGAGGAACACCGCATCCAG
CTGGACACTCTGGCCACTCAGTACTCGGAGAGGATGCTGATAGAGTACCA
GAAGTTCACCAATCTGCGCGAGAATATGCTGGAGCTGCGTGAGAGCTACG
AGGACAAGCTGAAGAACTCCACGGGCACGCTGCAGGATACGGTGGAGGCA
CTGGAGAACAACTACAAGCAGCAACTGAACGAGCGCAAGGAGCTCATCCG
TGACCTGATGAAGGAGATGCAGGACAAGAAGGCCGAGTTCATTGAGTACT
GCCGCGAGGTTGAGCTGGAGAACGATCGCAACATGGTCTCCACGCAAACG
GAGTACGAGAACAAGTTGACCACTGAGCGAAATGAAACCCAAATGTGGCG
AGGTAAAGCGGGTGTCTTGCAGAAGAAATTCGAGTCGCAGAGCCGAGAAA
TTGACAATCTCCTAGAGGAAGTTGAGATCCTAAAGGAGGAGCACCACAAG
TCGCAGCGCAACATCCAGAAACAGATGCGCAACATCGAGGATCTGCAGAA
GGACATTGCCGATCGCGACTACGCCATCAACGGCAAGGAAAAACGCATCC
AAGACCTGCTGCACAAGAACCAGGAGCTGGACAAGTACAAGCAGGTGCTG
GGCCACAAGATTGCCGAGCTCAAGGCGCAGATTGAGCCGCGTGAGTTTCA
GATCAACGACAAGCGCAAGCACATCATCGAAATGGAAGCGGAGCTGGAGG
GTCTCAATCAGAACAACGTGCAGTTGGAGCTGCAGTTAAAGGAGATGCGG
GATAAATACCTCAGTAATGTGGCCGAACTTCGGACGGAGCGACATCGGGC
AAAGGCTTCTCGGGAGTGCCTGCACTCCATCTGCTCGGATATTTACTACG
TGGCCGGGGAGATCAACTCGGCCGAGGCCCTCAAGAAGGCGGTGAAAGAA
CTGTTCCGCAAACACGCCTCCGACGACGAGCTAAAGCGATTCGTCACTCT
GGACGCGGAGGTCAGGGACGAGTTTATGCGGCAGCGCAGGCAGATCGAGA
ATGTTCTGGACCGATACAAGTCGGTGGCCGAAGACAAATCCGTGCAGAAG
AAGTACGACAAGCTGTTCAAGGAGAACGTGATCCTGATTGAGGAGATCGA
GAAGCTGAACGAGACCAATAAGATGCTGCGCAGCAAGGTGAAGGAGGACC
TGCGTCGATCAACAAAGACAATACACAAGTAGAAGCTTTCTAGACCAT
BS22983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4329-RA | 3516 | CG4329-PA | 1..3516 | 17..3532 | 17265 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4329-RA | 3781 | CG4329-RA | 157..3673 | 17..3533 | 17270 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22609442..22611578 | 3533..1397 | 10550 | 99.6 | Minus |
| 2R | 25286936 | 2R | 22611865..22612790 | 1226..301 | 4555 | 99.5 | Minus |
| 2R | 25286936 | 2R | 22613020..22613220 | 217..17 | 930 | 97.5 | Minus |
| 2R | 25286936 | 2R | 22611646..22611815 | 1396..1227 | 820 | 98.8 | Minus |
| 2R | 25286936 | 2R | 22612879..22612965 | 300..214 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:52:19 has no hits.
BS22983.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:54 Download gff for
BS22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4329-RA | 116..3631 | 17..3532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:11 Download gff for
BS22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4329-RA | 157..3672 | 17..3532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:44 Download gff for
BS22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4329-RA | 157..3672 | 17..3532 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:44 Download gff for
BS22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22609443..22611578 | 1397..3532 | 99 | <- | Minus |
| 2R | 22611646..22611815 | 1227..1396 | 98 | <- | Minus |
| 2R | 22611865..22612790 | 301..1226 | 99 | <- | Minus |
| 2R | 22612879..22612962 | 217..300 | 100 | <- | Minus |
| 2R | 22613021..22613220 | 17..216 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:11 Download gff for
BS22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18496948..18499083 | 1397..3532 | 99 | <- | Minus |
| arm_2R | 18499151..18499320 | 1227..1396 | 98 | <- | Minus |
| arm_2R | 18499370..18500295 | 301..1226 | 99 | <- | Minus |
| arm_2R | 18500384..18500467 | 217..300 | 100 | <- | Minus |
| arm_2R | 18500526..18500725 | 17..216 | 97 | | Minus |
BS22983.pep Sequence
Translation from 16 to 3531
> BS22983.pep
MDEANKEDVKRASLSNSTVTIRPRLIYGLRSDVIGNIHFNLTKEVIYPVE
GVLAFHDYVQNKQRFLRLPEDTRPEVISISSHRKLLAVVERHSKNGRYIS
IYELATLKKRRHLELPSNHRNAEIQQMIFTNDSRSVALITRPPEETLIML
VLDKTSTVIEGRATIPGSHGGAECIAGNPNDCNFMAVGGERTLLLMSKSE
RGFSISNNLKVKYRVTSMAFLSLDLLMIGTSDDQLILVENGEQKLAQKAS
DADTVDLMIDQEVFDRDKELQEQRFLPTQAVSLPDRRVLCMTAFPKGFAY
IIFNRAFVFERVSKFKFERKTILTVPTNLYAEHMYQILNLAIDHKQETVI
VTTSHCQIYVGILIVPETLKTKQLKFEPLGVLIHTGEIIAMSVCAWKPII
MTASRDQTIRIWNYETALVELVRKFQVDVNIVELSLTGQMAAIGFSDQLR
ITQIFMDDLNIVKTYNFPHCNAVRYSNFGHMMAAAYDNNIAITSVYKLDV
LINLKGHNGIVLSVAWSRTDKFLISGGAEGAIYLWDIETGARLQEIVQKG
TEYVTISCSTNDPLTIYAGTSIGTIREFQDSTLMREITIPSRTKGSVSDV
CLARSDLIMFVADHEGNLFNMQLPFLEAGGGTFTNFRFFDGPVNKLRFSY
DGTLLFAISNKGTLAIWAMDNIEGKVPYMDQDLMRSQEVLIPRSQLNDKI
EQIANLELRLKQQAEEFQYQLSQNEIFDGQQLQEVHRSYCSALEELKELN
NEIEARHTEEMNHITFQINSIREEHRIQLDTLATQYSERMLIEYQKFTNL
RENMLELRESYEDKLKNSTGTLQDTVEALENNYKQQLNERKELIRDLMKE
MQDKKAEFIEYCREVELENDRNMVSTQTEYENKLTTERNETQMWRGKAGV
LQKKFESQSREIDNLLEEVEILKEEHHKSQRNIQKQMRNIEDLQKDIADR
DYAINGKEKRIQDLLHKNQELDKYKQVLGHKIAELKAQIEPREFQINDKR
KHIIEMEAELEGLNQNNVQLELQLKEMRDKYLSNVAELRTERHRAKASRE
CLHSICSDIYYVAGEINSAEALKKAVKELFRKHASDDELKRFVTLDAEVR
DEFMRQRRQIENVLDRYKSVAEDKSVQKKYDKLFKENVILIEEIEKLNET
NKMLRSKVKEDLRRSTKTIHK*
BS22983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4329-PA | 1171 | CG4329-PA | 1..1171 | 1..1171 | 5953 | 100 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 905..1364 | 686..1165 | 186 | 18.5 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 908..1367 | 686..1165 | 186 | 18.5 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 930..1389 | 686..1165 | 186 | 18.5 | Plus |
| CLIP-190-PC | 1652 | CG5020-PC | 959..1418 | 686..1165 | 186 | 18.5 | Plus |
