BS22990.complete Sequence
1103 bp assembled on 2011-02-07
GenBank Submission: KX800594
> BS22990.complete
GAAGTTATCAGTCGACATGGGTCCCCAGCCGGAGCAAGCGCAGATGCACT
TCAGTCCCAAGGTGGACTACATTCTCATCCTGGACAAGTTGCGCGAGGAC
TTCAACAAGAAGTTCGCCACCAACACGCCGTCGCCTAGTACGGGTCTGGA
TGACTACGAGATTAAGGCGACCCTCGGATCCGGATCCTTCGGCAAGGTGC
AGTTGGTGAGGGAGCGCGAGTCCGGCGTCTATTACGCCTCCAAGCAGCTC
AGCAAGGATCAGATCGTGAAGACTAAACAGGTGAGCCACGTGATGAGCGA
GAAAAACGTGCTGCGTTCGATGACGTTCCCGAATACGGTCAACCTGATAG
CCTCCTACAAGGACTTCGACAGCCTTTACCTCGTCCTGCCCCTAATTGGT
GGCGGAGAGCTCTTCACCTACCACCGAAAAGTGCGAAAGTTTACGGAAAA
ACAGGCCCGCTTCTATGCTGCCCAGGTGTTTTTGGCTCTGGAGTATCTGC
ATCATTGCAGTTTGCTCTATAGAGACCTCAAACCGGAGAACATAATGATG
GATAAGAACGGATACTTGAAAGTGACAGATTTCGGATTTGCCAAGAAAGT
GGAAACCCGTACAATGACATTGTGCGGAACTCCGGAGTACCTGCCGCCAG
AGATTATCCAATCGAAGCCTTACGGAACCAGCGTGGACTGGTGGGCTTTT
GGGGTACTGGTCTTTGAATTCGTCGCTGGACACTCGCCCTTCTCGGCCCA
CAATCGCGATGTGATGAGCATGTACAACAAGATCTGTGAGGCGGACTATA
AGATGCCCAGTTATTTCAGTGGAGCTCTACGTCATTTGGTGGACCACTTG
CTGCAGGTGGATCTCTCGAAGCGTTTTGGCAACCTGATCAACGGCAATCG
GGACATAAAGGAGCACGAGTGGTTCAAGGATGTGGAGTGGATCCCCCTCC
TCAATCAGACAGTTAACGCACCCTATGTGCCCAACATCAGCAATCCCGAG
GATATATCCAACTTCGATAAGGTCTCTGATAAGCCGCGACCCAAGGCGAA
AACCATGCGACACGAGGAAGCCTTCGCGGACTTTTAAAAGCTTTCTAGAC
CAT
BS22990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12069-RC | 1071 | CG12069-PC | 1..1071 | 17..1087 | 5295 | 99.6 | Plus |
| CG12069-RA | 1071 | CG12069-PA | 1..1071 | 17..1087 | 5295 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12069-RC | 1259 | CG12069-RC | 118..1188 | 17..1087 | 5295 | 99.6 | Plus |
| CG12069-RA | 1750 | CG12069-RA | 118..1188 | 17..1087 | 5295 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30694969..30695381 | 429..17 | 2050 | 99.8 | Minus |
| 3R | 32079331 | 3R | 30694401..30694680 | 873..594 | 1370 | 99.3 | Minus |
| 3R | 32079331 | 3R | 30694134..30694348 | 1087..873 | 1060 | 99.5 | Minus |
| 3R | 32079331 | 3R | 30694747..30694912 | 595..430 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:23:25 has no hits.
BS22990.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 15:00:22 Download gff for
BS22990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12069-RA | 118..1186 | 17..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:25 Download gff for
BS22990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12069-RA | 118..1186 | 17..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:32 Download gff for
BS22990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12069-RA | 118..1186 | 17..1085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:32 Download gff for
BS22990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30694136..30694347 | 874..1085 | 99 | <- | Minus |
| 3R | 30694401..30694678 | 596..873 | 99 | <- | Minus |
| 3R | 30694747..30694912 | 430..595 | 100 | <- | Minus |
| 3R | 30694969..30695381 | 17..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:25 Download gff for
BS22990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26519858..26520069 | 874..1085 | 99 | <- | Minus |
| arm_3R | 26520123..26520400 | 596..873 | 99 | <- | Minus |
| arm_3R | 26520469..26520634 | 430..595 | 100 | <- | Minus |
| arm_3R | 26520691..26521103 | 17..429 | 99 | | Minus |
BS22990.pep Sequence
Translation from 16 to 1086
> BS22990.pep
MGPQPEQAQMHFSPKVDYILILDKLREDFNKKFATNTPSPSTGLDDYEIK
ATLGSGSFGKVQLVRERESGVYYASKQLSKDQIVKTKQVSHVMSEKNVLR
SMTFPNTVNLIASYKDFDSLYLVLPLIGGGELFTYHRKVRKFTEKQARFY
AAQVFLALEYLHHCSLLYRDLKPENIMMDKNGYLKVTDFGFAKKVETRTM
TLCGTPEYLPPEIIQSKPYGTSVDWWAFGVLVFEFVAGHSPFSAHNRDVM
SMYNKICEADYKMPSYFSGALRHLVDHLLQVDLSKRFGNLINGNRDIKEH
EWFKDVEWIPLLNQTVNAPYVPNISNPEDISNFDKVSDKPRPKAKTMRHE
EAFADF*
BS22990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12069-PC | 356 | CG12069-PC | 1..356 | 1..356 | 1886 | 100 | Plus |
| CG12069-PA | 356 | CG12069-PA | 1..356 | 1..356 | 1886 | 100 | Plus |
| Pka-C2-PB | 354 | CG12066-PB | 6..354 | 8..356 | 1107 | 58.2 | Plus |
| Pka-C2-PC | 353 | CG12066-PC | 6..353 | 8..356 | 1092 | 57.9 | Plus |
| Pka-C1-PD | 353 | CG4379-PD | 22..353 | 22..356 | 849 | 48.1 | Plus |
