BS22993.complete Sequence
1451 bp assembled on 2011-02-07
GenBank Submission: KX803123
> BS22993.complete
GAAGTTATCAGTCGACATGCCTTTCCGGGCCGAACACAAGGCAGAGGACG
AGAAGGTGCAGATCACAGGTCCGGAGGACAACCAACACCAACAAAACAAC
AACAACAACGATTGGGAGCCGAACAGGATGGTGCTACCGTTTGGACTTGG
ACCCGATGGCCATCACGTGGATGCCATTCAGAGTGCTCCGGCGCCCAGTG
CGCCCCCCGCCCACATGATGCCACCAGCCTACGCCCGGGGACAAACAAAC
ATATACACAGGTGTTCCGATCATCGTGAATCCCTACATAGACTTCATCGT
GGTCAACGGGGATGATCGATACATGATCAGATGCGAACGAAAGTCGGTAC
TCGAGCGGAGCGTGGAGCTGGCCAAGCTTATCCACGCCGGTCCGAACAGC
GGTCGCAAGAGCGACAATCATTTCCAGATACTCAACGTGGACAAGAACGA
CTTCGAGCTGATCGTCCGCTACATGGAGAAGCACTTCATTCCCTACCGCG
ATCACAAGCACCTGCTCAAGATACTGGAGCTATCCGATCGCTTCAACGTT
CCAGATCTGATAATCTACTGCATTCGCGAACTTGATCTCAGAATCTCGAG
CGCCACGGCACTGGACATCTTCAAGGCGCTGTGGTTCTACCAGGGCATCG
CACTGACCAACCAGCACCAAACGGTGATCACCACCCAGGAGACGGGCCAG
CAGCTGGCCAGGAAGAAGGCGACCAAGGCGAAGGCGGCGGCCAAGCAGCT
GGCGGCTGCCAAGGCCTCTCAGTCCACCGAAAACGGAGCGGAGGGCGATG
GAGCCCAGCAGAACCTCATTCCTAACCCAAATCCCTTTACCACCGAAGAT
TACGGCGTGGCGCTGCTGCACAACACGCTCCAGCTGATCGATATGCACGC
AGAGCTGCAGCTTTCGATGCCGGAGATCAGTGATCTCAGGTTCGAGGAGC
TGGAGACGCTGGTCAAGAGGGATACCTTGCAGCTCAGGTCGGAGGTCACT
CTGTTCGAGTGCCTGGCCACGTGGAGTCTGGCGGAGTGCGCCCGCAAGCA
TATCGATGCCACGCCGGAGAACCGTCGCACTGTCCTCGGTCCACTATGCC
TCACACCTCGTTACTTGCGGATGACCGCCAGCGAATTCCGGCGATGCTGC
GAACGCCTGGAGCTACTGCCACCCACTGAGATATCTCTTATCACCGACGC
CCTCGATGGCAAAAAGCTAAAGAACCTCACCGATCAGCAGGCGGAGCTGC
TGGAGAAGTTCCGCCAGCCGCGTGCCGAATACGCCCGGATGCCCGTCCAC
CTGAGCGACCGGAGCAGTCCGAAGAACTATCCCAAGAAGATGCGGCTGGC
CCACGAGGGTCGGCCCACGGAGGATGGATGCTGGGAGAAGGTGGGAATGA
ACTGTCTCCGCATCTTCGTCTGCATATTTGACTGAAAGCTTTCTAGACCA
T
BS22993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RA | 1614 | CG8398-PA | 218..1614 | 39..1435 | 6970 | 99.9 | Plus |
| CG8398-RE | 1308 | CG8398-PE | 1..1308 | 128..1435 | 6525 | 99.9 | Plus |
| CG8398-RD | 1308 | CG8398-PD | 1..1308 | 128..1435 | 6525 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RE | 1911 | CG8398-RE | 329..1725 | 39..1435 | 6970 | 99.9 | Plus |
| CG8398-RD | 2094 | CG8398-RD | 512..1908 | 39..1435 | 6970 | 99.9 | Plus |
| CG8398-RC | 1850 | CG8398-RC | 268..1664 | 39..1435 | 6970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6616666..6617316 | 559..1209 | 3240 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6616076..6616600 | 39..563 | 2610 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6617767..6617994 | 1208..1435 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:16:56 has no hits.
BS22993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 12:03:21 Download gff for
BS22993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RD | 512..1907 | 39..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:54 Download gff for
BS22993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RC | 268..1663 | 39..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:25 Download gff for
BS22993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RC | 268..1663 | 39..1434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:25 Download gff for
BS22993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6609382..6609406 | 17..40 | 92 | -> | Plus |
| 3L | 6616078..6616596 | 41..559 | 100 | -> | Plus |
| 3L | 6616667..6617315 | 560..1208 | 99 | -> | Plus |
| 3L | 6617768..6617993 | 1209..1434 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:54 Download gff for
BS22993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6602482..6602506 | 17..40 | 92 | -> | Plus |
| arm_3L | 6609178..6609696 | 41..559 | 100 | -> | Plus |
| arm_3L | 6609767..6610415 | 560..1208 | 99 | -> | Plus |
| arm_3L | 6610868..6611093 | 1209..1434 | 100 | | Plus |
BS22993.pep Sequence
Translation from 16 to 1434
> BS22993.pep
MPFRAEHKAEDEKVQITGPEDNQHQQNNNNNDWEPNRMVLPFGLGPDGHH
VDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIVNPYIDFIVVNGDD
RYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQILNVDKNDFELIV
RYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIRELDLRISSATALD
IFKALWFYQGIALTNQHQTVITTQETGQQLARKKATKAKAAAKQLAAAKA
SQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNTLQLIDMHAELQLS
MPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWSLAECARKHIDATP
ENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPTEISLITDALDGKK
LKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKNYPKKMRLAHEGRP
TEDGCWEKVGMNCLRIFVCIFD*
BS22993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-PA | 537 | CG8398-PA | 69..537 | 4..472 | 2448 | 99.1 | Plus |
| CG8398-PE | 435 | CG8398-PE | 1..435 | 38..472 | 2277 | 100 | Plus |
| CG8398-PD | 435 | CG8398-PD | 1..435 | 38..472 | 2277 | 100 | Plus |
| CG8398-PC | 435 | CG8398-PC | 1..435 | 38..472 | 2277 | 100 | Plus |
