BS23005.complete Sequence
933 bp assembled on 2011-02-02
GenBank Submission: KX805494
> BS23005.complete
GAAGTTATCAGTCGACATGGATGGGGACCAAGTAAAGGGCATCCTGAAGT
CGGGAAACAATAGTGCGCAATTTAGCCTGAAGGCAGCCAAATTTGATGAG
GTCAACATACTGGCCACGTTCCACCCGGCTGGTAAGGACTACGGCCACAT
GATCATCGACGAACCAAAGACACCCTTCGTCTTTGAGGAGGATTTGCCAA
AGGAGTTGGATACAAATGCCCTGATCGAAAAGTTGAGACACACATCAAAG
TCAGAAATGCCGGCATTTGGCATCGAAGGAGACTCAGAAGAATCCTCGGC
GGATGAGGACTTTCCCGAGTCTGTAGAGGAAAAAGTGCGTAGAATGGAGT
TTGAGAGGCGGCGAAAAGTGCATTACAAGGAGTTCTATTCGGTTCCACTG
GCTCGACGTCTTATAGCCGACGAGTTTGCCGAGTTGACCAGTTCAGAGTT
TAATATTCACTGCGAAGGGGGAATGGAATCTTGTGAAGCGTGCAGTGAAA
ACAATCAACTCGACGGCGAAGCAAGCAACTTGACGCAAACAAAATACTCA
TATTCTGAAAGTCAATCCGAATACAGGATATCAGATCATTCTGAGCCTGA
ACCAGGTTTCTCCCCCAGCCATCACTGCTACCAAAAACTGAAGGCCGAGC
TCTTTAGCAAAGCAGAGCCGGAAGAATTGGCCTCTTTAACGCACTTGCAT
CGAATGCCATCGGTCAACGATGATGAACCAAGTCGCGAGCCTCGCGTCCC
ATACCCTTCGGTTGTTCCGACTCAAACCCAAAATCTACATGAACACAAGA
GTTCACTGAAAATAACGTCCGAGAAGCCTACTCCTGCTCGTATATGTAAA
TCCAACCCTGATAATCGTCCTGGCACTTCTAAGAAAGAGACCCGCTGAAA
GCTTTCTAGACCATTCGTTTGGCGCTCTAACGG
BS23005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6380-RB | 882 | CG6380-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
| CG6380-RA | 882 | CG6380-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6380-RB | 1128 | CG6380-RB | 95..978 | 17..900 | 4420 | 100 | Plus |
| CG6380-RA | 1069 | CG6380-RA | 95..978 | 17..900 | 4420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17291225..17292108 | 900..17 | 4420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:02:47 has no hits.
BS23005.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-02 09:57:06 Download gff for
BS23005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6380-RA | 95..986 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:53 Download gff for
BS23005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6380-RA | 95..986 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:38 Download gff for
BS23005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6380-RA | 95..986 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:38 Download gff for
BS23005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17291217..17292108 | 17..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:53 Download gff for
BS23005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17291217..17292108 | 17..909 | 99 | | Minus |
BS23005.pep Sequence
Translation from 16 to 897
> BS23005.pep
MDGDQVKGILKSGNNSAQFSLKAAKFDEVNILATFHPAGKDYGHMIIDEP
KTPFVFEEDLPKELDTNALIEKLRHTSKSEMPAFGIEGDSEESSADEDFP
ESVEEKVRRMEFERRRKVHYKEFYSVPLARRLIADEFAELTSSEFNIHCE
GGMESCEACSENNQLDGEASNLTQTKYSYSESQSEYRISDHSEPEPGFSP
SHHCYQKLKAELFSKAEPEELASLTHLHRMPSVNDDEPSREPRVPYPSVV
PTQTQNLHEHKSSLKITSEKPTPARICKSNPDNRPGTSKKETR*
BS23005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6380-PB | 293 | CG6380-PB | 1..293 | 1..293 | 1541 | 100 | Plus |
| CG6380-PA | 293 | CG6380-PA | 1..293 | 1..293 | 1541 | 100 | Plus |
| I-2-PA | 205 | CG10574-PA | 12..144 | 7..136 | 315 | 51.5 | Plus |
| I-2-PB | 310 | CG10574-PB | 117..249 | 7..136 | 315 | 51.5 | Plus |
| CG12620-PB | 287 | CG12620-PB | 4..237 | 22..251 | 259 | 30.9 | Plus |
