BS23013.complete Sequence
1085 bp assembled on 2011-02-03
GenBank Submission: KX805496
> BS23013.complete
GAAGTTATCAGTCGACATGAACACTCTAATGAAAATTCAATTGGTTAGGC
CTGTTTTTCGCATTACGTTGAGGAATTATGGGAAACCAGAGCGATTTATG
TGGTGTCAGAAGGAGTATGCTAGAGCTCCCAAGGTGGTTTGCTTGGACGG
AAATGAGATTCCAGTAATTGGGCTCGGAACTTTCAATAGCCCCAAGGGTC
AGGTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATT
GACTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGA
GGCCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCA
GCAAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTG
GAGAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTAT
CCACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACA
AGGATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAG
GCCATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTC
CAACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTC
CACCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAG
CTGATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCC
CTTGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCC
TAGAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCT
GGACAGATCCTTATTCGATACCAAGTTCAGCGTGCCAACATTGTTATCCC
CAAATCTGTGACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGACT
TCGAACTGACACCTGAGGAAATCGAAATCATCGAAAGCTTCGAGTGCAAC
GGCCGCCTTGTTCCCCTACTCAAGGATGCTGGTACCCATAAGTACTATCC
GTTCCATGACGAGTATTAGAAGCTTTCTAGACCAT
BS23013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6084-RB | 1053 | CG6084-PB | 1..1053 | 17..1069 | 5250 | 99.9 | Plus |
| CG6084-RC | 1053 | CG6084-PC | 1..1007 | 17..1023 | 5020 | 99.9 | Plus |
| CG6084-RD | 951 | CG6084-PD | 70..951 | 188..1069 | 4395 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6084-RB | 1353 | CG6084-RB | 35..1087 | 17..1069 | 5250 | 99.9 | Plus |
| CG6084-RC | 1172 | CG6084-RC | 35..1041 | 17..1023 | 5020 | 99.9 | Plus |
| CG6084-RD | 1316 | CG6084-RD | 169..1050 | 188..1069 | 4395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11621483..11621967 | 814..330 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 11621213..11621424 | 1024..813 | 1045 | 99.5 | Minus |
| 3L | 28110227 | 3L | 11622033..11622175 | 330..188 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 11624260..11624347 | 104..17 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 11624114..11624199 | 187..102 | 430 | 100 | Minus |
| 3L | 28110227 | 3L | 11621058..11621107 | 1069..1020 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:09:58 has no hits.
BS23013.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:40 Download gff for
BS23013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RB | 35..1087 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:49 Download gff for
BS23013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RB | 35..1087 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:51 Download gff for
BS23013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RB | 35..1087 | 17..1069 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:51 Download gff for
BS23013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11624114..11624198 | 103..187 | 100 | <- | Minus |
| 3L | 11624262..11624347 | 17..102 | 100 | | Minus |
| 3L | 11621058..11621103 | 1024..1069 | 100 | <- | Minus |
| 3L | 11621214..11621422 | 815..1023 | 99 | <- | Minus |
| 3L | 11621483..11621966 | 331..814 | 100 | <- | Minus |
| 3L | 11622033..11622175 | 188..330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:49 Download gff for
BS23013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11614158..11614203 | 1024..1069 | 100 | <- | Minus |
| arm_3L | 11614314..11614522 | 815..1023 | 99 | <- | Minus |
| arm_3L | 11614583..11615066 | 331..814 | 100 | <- | Minus |
| arm_3L | 11615133..11615275 | 188..330 | 100 | <- | Minus |
| arm_3L | 11617214..11617298 | 103..187 | 100 | <- | Minus |
| arm_3L | 11617362..11617447 | 17..102 | 100 | | Minus |
BS23013.pep Sequence
Translation from 16 to 1068
> BS23013.pep
MNTLMKIQLVRPVFRITLRNYGKPERFMWCQKEYARAPKVVCLDGNEIPV
IGLGTFNSPKGQVTEAVKVAIDAGYRHIDCAYVYQNEDEVGDGVEAKIKE
GVVKREDLFITSKLWNTFHRPDLVKSALENTLSSLKLKYLDLYLIHWPMG
YKEGCDLFPTDKDGKTLYSPVDYVDTWKAMEKLVEEGLVKSIGVSNFNRR
QIERVLEVATIPPVTNQIECHPYLTQKKLIDFCKSKDITITAYSPLGSPN
RPWAKAGDPVILEEAKIKEIAAKKKKTPGQILIRYQVQRANIVIPKSVTK
DRIESNFQVFDFELTPEEIEIIESFECNGRLVPLLKDAGTHKYYPFHDEY
*
BS23013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6084-PB | 350 | CG6084-PB | 1..350 | 1..350 | 1850 | 100 | Plus |
| CG6084-PC | 350 | CG6084-PC | 1..350 | 1..350 | 1780 | 97.4 | Plus |
| CG6084-PD | 316 | CG6084-PD | 4..316 | 38..350 | 1598 | 96.8 | Plus |
| CG6084-PA | 316 | CG6084-PA | 4..316 | 38..350 | 1528 | 93.9 | Plus |
| CG6083-PA | 322 | CG6083-PA | 4..314 | 38..346 | 816 | 51 | Plus |
