BS23024.complete Sequence
1472 bp assembled on 2011-02-03
GenBank Submission: KX800452
> BS23024.complete
GAAGTTATCAGTCGACATGATGAAGTTCAGTTGTGTCCGCGTGGCGATGA
GATGCAGTGGAGCCCACTCCATCCTCGAGAGAAATATGCTCTGCAGGATA
ATAGGGCGCCACAAATGTAGCTGTTTGACCCTGGAGAACACGTTCAAGTG
CTACGACCTGGAGAATGGACCCACAATGGACGTGGAGCTGTCCAGGGAGG
ACGCCCTGACGATGTACACGCAGATGCTGGAACTGCGCCGGTTCGAGACG
GTGGCGGGCAACTACTATAAGGAGCGAAAAATCCGCGGCTTCTGCCATTT
ATATAACGGACAGGAGGCCGTCGCTGTTGGCATGAAGCAGCGTTTGAGGT
CCTGCGACTCGGTCATAACGGCATACCGTTGTCATGCCTGGACCTATTTA
ATGGGTGTTTCCCTTTACGAAATAATGGCGGAATTGTTCGGAGTTCGAAC
TGGATGCAGCCGGGGCAAAGGTGGCTCTATGCACATGTACAGCGATAAGT
TTTATGGCGGCAATGGTATCGTTGGTGCCCAAGTTCCGCTCGGCGCGGGA
ATTGGCCTCGCGCACAGTTATCGCAAGGACAACGGCGTGTCGGTGGTCCT
TTATGGTGATGGTGCCGCCAATCAGGGCCAGATCTTTGAGTCCTTCAACA
TGGCCAAGCTGTGGTGCTTGCCCTGCATATTCGTTTGCGAGAACAATCAC
TACGGCATGGGCACCCACGTTAAGCGGGCCTCTGCCATGACGGAGTTCTA
CATGCGTGGCCAATATATCCCTGGTCTTTGGGTCGATGGCAATCAGGTGC
TGGCCGTGCGTAGCGCCACCCAATTCGCCGTGGACCATGCCCTCAAGCAC
GGACCCATTGTGCTCGAGATGAGCACCTATCGCTATGTGGGTCACTCCAT
GTCCGATCCGGGTACATCGTATCGCTCGAGAGAAGAAGTCCAATCGACGA
GGGAGAAACGCGATCCGATTACAAGTTTCCGCAGTCAGATCATCGCCTTG
TGTCTCGCCGACGAGGAGGAGCTGAAGGCCCTGGATGATAAGACTAGGAA
GCAGGTGGATAGCATTTGCAAGAAAGCCACCACCGACAGGGAGGTAGAAC
TTGATGAGCTGCACACCGATATCTATGCCAAGAATGTGGATGGTAAGATC
CGCGGCGTGTCCGGATTCCATTTAGAGCACATCAAGCTGGCGGAGGTGTG
CTTTGGCAAGCCGAAGAAGACGCCGGCCAGCGAGATCAACGACGTGCCAG
TGGGCGCAGAGATTGACGTGGCCAAGGCCAAGGAAAGGAAGGCCAAGCAG
GATGCCAAGAAGGCCAAGGAAGCCAAGGAACCTAAAGGTGGCGACAAGAA
GGGCGCCGACGCCAAGCAGCCCAAAGGCGAGGGCGACGATGGCGATAAGA
AGCCAAAACCAGCCGCACAGCCGCCCACCAAGGCGCCACCCGCTCCCAAA
AAGTAGAAGCTTTCTAGACCAT
BS23024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7024-RA | 1440 | CG7024-PA | 1..1440 | 17..1456 | 7185 | 99.9 | Plus |
| l(1)G0334-RB | 987 | CG7010-PB | 371..702 | 594..925 | 265 | 72 | Plus |
| l(1)G0334-RD | 1200 | CG7010-PD | 584..915 | 594..925 | 265 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7024-RA | 1878 | CG7024-RA | 256..1695 | 17..1456 | 7185 | 99.9 | Plus |
| l(1)G0334-RB | 1992 | CG7010-RB | 1023..1354 | 594..925 | 265 | 72 | Plus |
| l(1)G0334-RD | 1667 | CG7010-RD | 698..1029 | 594..925 | 265 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4706005..4707321 | 140..1456 | 6570 | 99.9 | Plus |
| X | 23542271 | X | 4705564..4705686 | 17..139 | 615 | 100 | Plus |
| X | 23542271 | X | 4704287..4704415 | 797..925 | 195 | 76.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:10:57 has no hits.
BS23024.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:41 Download gff for
BS23024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7024-RA | 256..1695 | 17..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:20 Download gff for
BS23024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7024-RA | 256..1695 | 17..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:11 Download gff for
BS23024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7024-RA | 256..1695 | 17..1456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:11 Download gff for
BS23024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4705564..4705686 | 17..139 | 100 | -> | Plus |
| X | 4706005..4707321 | 140..1456 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:20 Download gff for
BS23024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4599597..4599719 | 17..139 | 100 | -> | Plus |
| arm_X | 4600038..4601354 | 140..1456 | 99 | | Plus |
BS23024.pep Sequence
Translation from 16 to 1455
> BS23024.pep
MMKFSCVRVAMRCSGAHSILERNMLCRIIGRHKCSCLTLENTFKCYDLEN
GPTMDVELSREDALTMYTQMLELRRFETVAGNYYKERKIRGFCHLYNGQE
AVAVGMKQRLRSCDSVITAYRCHAWTYLMGVSLYEIMAELFGVRTGCSRG
KGGSMHMYSDKFYGGNGIVGAQVPLGAGIGLAHSYRKDNGVSVVLYGDGA
ANQGQIFESFNMAKLWCLPCIFVCENNHYGMGTHVKRASAMTEFYMRGQY
IPGLWVDGNQVLAVRSATQFAVDHALKHGPIVLEMSTYRYVGHSMSDPGT
SYRSREEVQSTREKRDPITSFRSQIIALCLADEEELKALDDKTRKQVDSI
CKKATTDREVELDELHTDIYAKNVDGKIRGVSGFHLEHIKLAEVCFGKPK
KTPASEINDVPVGAEIDVAKAKERKAKQDAKKAKEAKEPKGGDKKGADAK
QPKGEGDDGDKKPKPAAQPPTKAPPAPKK*
BS23024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7024-PA | 479 | CG7024-PA | 1..479 | 1..479 | 2542 | 100 | Plus |
| l(1)G0334-PD | 399 | CG7010-PD | 45..392 | 43..390 | 1142 | 59.8 | Plus |
| l(1)G0334-PA | 399 | CG7010-PA | 45..392 | 43..390 | 1142 | 59.8 | Plus |
| l(1)G0334-PC | 443 | CG7010-PC | 89..436 | 43..390 | 1142 | 59.8 | Plus |
| l(1)G0334-PB | 328 | CG7010-PB | 1..321 | 70..390 | 1075 | 61.1 | Plus |
