BS23031.complete Sequence
3017 bp assembled on 2011-02-16
GenBank Submission: KX802227
> BS23031.complete
GAAGTTATCAGTCGACATGCTGCGCCAGAACCTGTTGGATCAGCTTAAGC
ACTTCATAGAGACGGTGAGCAATGGGCACAGTTGTCCGCAGCTGCTGACC
AGCCCCAATCTCATCAAGCTCGCACTGGGATTCCTGGAGGAGCTGCCCGC
CACGCGAGACATTGTGTTCGAATACTTCGCCCTGCTGGCCGAAATCAGTG
TGCAGCTGTATGTGTCGCCGGAGATGGCCGACCCAAAGACCGGTATGCCG
GTATCCCAGGTGAAGCTGGCCGGGAATCGCCAGCAGCAGCAACGTGCTCC
GGAATACGAGGCTTTCAATCTGGTAAAGACCGCGCTGCAGAGTCTGGTGT
GGAAGGGACCGCCCGCCTGGTCGCCGCTCATCGCCAACTGGAGTCTGGAA
CTGGTGGCCAAGCTGTCCGATAAGTACACCCAGCGGCGGATGACCATCAC
GGCCAGCTGCAACTATTGGCTGGAGTGCAGCGCCATGCACGGGCTGATGA
CCCTTATAAATAGTTGTTTCCGGAAGTTAACCCAACCGGAGGAGGAGGCC
TGCGTGGAGATCATGCTCAATGCCTTTCACCGGTTTCCCATGACCTTCGA
CTGGATTGTGGCGAGATTGGGCGGCTGTTTCCCTTACAAGATCATCATGC
AGATTCTACAGTGCGGCATCAAGCGATTCGTCGATGACTACCGCTGCCAC
CTGGACTCGGAGGCGGGCATCCTCGATTATATGACCTCGTGCCACGAACA
GCACCTGAGGGCCGCCTTTCGTGAGATGCTTAGGGAGGGATTCGCACCGA
AGAAGCCGCTGGACGTGGCCGTCGTTCCTTTCCTGCTGATCACCACCAAC
TACTCGGACACGATCCTGCAGAGCTTGGTCAATGTGCTAGTCGAAATCTA
TACCGAGGACATGTGCGAGGTGATAGTGCAGAAGGCGCCGTTGTGGCTGA
GCAACAAAATGTTTGCCGGTATGCAGCCCACGCTGAATAATGCCGTGCTG
CGCCTGAACGAGCGTGGAGCGACGTTGCTCCTTACGGCAGCCAAAATGGC
CGAGAAGTATGTTTGGTGCCAGGATTTCCTGGACAATTCGATGCAGGAGC
TGGAACAGTGGGTGCTCAACCAGCGGAACTTCCCGTTGCTGGCCGATCTG
GCCTATGAGGAAACCAAGTACATGCTGTGGAAGAGCTGCCTCAGCACCAA
TCTCTTCGAGCAGCAAACAGCGGTGAGATTACTGCTGGTGGTCTCATCCC
AGCACCCGAATATTTACTACCAAACTATATCCCAACTTCTAAAGAAGTCG
TATGCTCAAAATCCCAATGGCATTGGCGCATTAATTCGCTTACTTGGCGG
ACAAAGCGGCATGGTTAACTTTCCGGGATTCACGCCAGGTTTCAAGATGG
TCTTGGAGGACATCACGTTGGATGTTCAAGTTAACAATCGATTGCCAGTT
CCGCCGGGCACACCCACAGAAGCCTTTAACACTTTCTCCAACCTAAACAT
ACTTGCCAGGATGCACAAGAGCAAGAATGTGGCTCCGTACATCAAAGCGC
AGCATTTGAACCAAGCCCTCAACGAATGTCTTCCCAAAATCCTTCAAATC
TTCGACTGCACCGTTAACAAACTGGTCCTGAGGATAGACAGGGATGCCGC
CGAGCGGATAGCGGATAAATTCCGGGCGCAGCAAAGTAAAAATAGCAATA
ACAACAATGAATTGTGCAATGGCAAGGATTACGGAAAGCGCACAAAATTG
GAGCCGGGAGAAGATAAGGTGGATGATGAGGACGCTACCCGCATGCGCTT
GGCCCATCTCATTGTGGATCTGTTGAACAACATTGAAGCCGGCAGCCGGA
CAACTGTCCTGCGCACTCCATTAGTCCTCAAGCTGGCCACGCTAAGCGTA
AAGTACTTCTTTGTGGGCTTAACCGAGAAGACTGTGATCCGTCGAGCAGC
GGCTTCGCATCGCTCCTACACGCTGTTGCAGAGGCAGTGTTCCGCCCGGA
AAATCGCGAGAACCGTCTGCCTGCGCGAGCTGGTGGAGCGCGCGCTCTTT
TATCACGGTCACTTGCTTGGTCAGCTGGAGGTGTATCAGCTCGATGAGCT
TGAGATACCCGAGCACGAACACCTCATCCTGCAGAATCTGCACACCAGCT
CTGGCGCCAACTCGAATCGCTCCGTGCTGCATTCCGGTATTATAGGCAGA
GGTCTGCGACCAGTGCTGCCCCCCAGCGAGCGGAACTGCGATGCGGAGAA
GCAGGCGCTGTATCTTAAGGCATTGAATGCATGCTGCGCCGATCTGGAGA
AGCCCAACAACGTGGAGGGCTACTCGCTGGTCTCGCTGCTGCTGGTCGAG
CTGGTCTCCACGGATGTCATGTACAACGGCCTGCCCTTTCCGGATGAGGA
GTTCACCAGGGTCACAATGGAGCGGGACATGCTAATCAGGAGAGCGTTCA
TCAACTCCCCAGTGCTGTGGGCTGTTTTGGGACTGATCGCCGGTCATAGG
CCGGCGCTTTGCTATTCCTCCGTGCTACTGCGCGCACTGTGCGCCACCTG
CTTGCATCACTGGCGGGGCAAGAATGTCAATCGATTCCAGCCCACTGCTG
CGAACGATGAGCTGATGCTGTGCACCAAGAAGATGCTGCAACTGCTGGCT
ATGAGCCAACTAATTCCACCTCCACTCACCAATCTGCATCTCATCATCGA
GCACTTTGAATCGGCAGAGATTGCCCTGCTGCTGCGCGAGTGCATCTGGA
ACTATCTTAAAGATCACGTGCCCTCGCCGGCGCTGTTTCACGTGGACAAC
AACGGGCTGCACTGGCGCAACACGAATACACAGCTGGCCAAGGTGCCGCC
GCAATATGTGGACCCGTTGCGCCACCTAATGCAGCGTAAGCTGTCCACCC
TGGGCCCCCACTACCATCAGATGTTCATCATGGGCGAGCTGATGGAGGGC
GACTCAGAGCCAGATCCGACGGCCCGGCTGCAGATCGTTGAAATAGATTA
AAAGCTTTCTAGACCAT
BS23031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| omd-RC | 2985 | CG9591-PC | 1..2985 | 17..3001 | 14820 | 99.8 | Plus |
| omd-RB | 2985 | CG9591-PB | 1..2985 | 17..3001 | 14820 | 99.8 | Plus |
| omd-RA | 2985 | CG9591-PA | 1..2985 | 17..3001 | 14820 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| omd-RC | 3186 | CG9591-RC | 59..3043 | 17..3001 | 14820 | 99.8 | Plus |
| omd-RB | 3334 | CG9591-RB | 59..3043 | 17..3001 | 14820 | 99.8 | Plus |
| omd-RA | 3350 | CG9591-RA | 223..3207 | 17..3001 | 14820 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13682187..13682962 | 899..124 | 3790 | 99.2 | Minus |
| 3R | 32079331 | 3R | 13680279..13680923 | 2576..1932 | 3225 | 100 | Minus |
| 3R | 32079331 | 3R | 13680983..13681407 | 1931..1507 | 2125 | 100 | Minus |
| 3R | 32079331 | 3R | 13681787..13682131 | 1244..900 | 1710 | 99.7 | Minus |
| 3R | 32079331 | 3R | 13679731..13680014 | 3001..2718 | 1420 | 100 | Minus |
| 3R | 32079331 | 3R | 13681464..13681729 | 1510..1245 | 1330 | 100 | Minus |
| 3R | 32079331 | 3R | 13680072..13680215 | 2719..2576 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 13683027..13683133 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:21:07 has no hits.
BS23031.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:20 Download gff for
BS23031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| omd-RA | 223..3205 | 17..2999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:48 Download gff for
BS23031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| omd-RA | 223..3205 | 17..2999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:52 Download gff for
BS23031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| omd-RA | 223..3205 | 17..2999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:52 Download gff for
BS23031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13681465..13681729 | 1245..1509 | 100 | <- | Minus |
| 3R | 13681787..13682131 | 900..1244 | 99 | <- | Minus |
| 3R | 13679733..13680012 | 2720..2999 | 100 | <- | Minus |
| 3R | 13680072..13680214 | 2577..2719 | 100 | <- | Minus |
| 3R | 13680279..13680923 | 1932..2576 | 100 | <- | Minus |
| 3R | 13680983..13681404 | 1510..1931 | 100 | <- | Minus |
| 3R | 13682187..13682962 | 124..899 | 99 | <- | Minus |
| 3R | 13683027..13683133 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:48 Download gff for
BS23031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9507187..9507451 | 1245..1509 | 100 | <- | Minus |
| arm_3R | 9505455..9505734 | 2720..2999 | 100 | <- | Minus |
| arm_3R | 9505794..9505936 | 2577..2719 | 100 | <- | Minus |
| arm_3R | 9506001..9506645 | 1932..2576 | 100 | <- | Minus |
| arm_3R | 9506705..9507126 | 1510..1931 | 100 | <- | Minus |
| arm_3R | 9507509..9507853 | 900..1244 | 99 | <- | Minus |
| arm_3R | 9507909..9508684 | 124..899 | 99 | <- | Minus |
| arm_3R | 9508749..9508855 | 17..123 | 100 | | Minus |
BS23031.pep Sequence
Translation from 16 to 3000
> BS23031.pep
MLRQNLLDQLKHFIETVSNGHSCPQLLTSPNLIKLALGFLEELPATRDIV
FEYFALLAEISVQLYVSPEMADPKTGMPVSQVKLAGNRQQQQRAPEYEAF
NLVKTALQSLVWKGPPAWSPLIANWSLELVAKLSDKYTQRRMTITASCNY
WLECSAMHGLMTLINSCFRKLTQPEEEACVEIMLNAFHRFPMTFDWIVAR
LGGCFPYKIIMQILQCGIKRFVDDYRCHLDSEAGILDYMTSCHEQHLRAA
FREMLREGFAPKKPLDVAVVPFLLITTNYSDTILQSLVNVLVEIYTEDMC
EVIVQKAPLWLSNKMFAGMQPTLNNAVLRLNERGATLLLTAAKMAEKYVW
CQDFLDNSMQELEQWVLNQRNFPLLADLAYEETKYMLWKSCLSTNLFEQQ
TAVRLLLVVSSQHPNIYYQTISQLLKKSYAQNPNGIGALIRLLGGQSGMV
NFPGFTPGFKMVLEDITLDVQVNNRLPVPPGTPTEAFNTFSNLNILARMH
KSKNVAPYIKAQHLNQALNECLPKILQIFDCTVNKLVLRIDRDAAERIAD
KFRAQQSKNSNNNNELCNGKDYGKRTKLEPGEDKVDDEDATRMRLAHLIV
DLLNNIEAGSRTTVLRTPLVLKLATLSVKYFFVGLTEKTVIRRAAASHRS
YTLLQRQCSARKIARTVCLRELVERALFYHGHLLGQLEVYQLDELEIPEH
EHLILQNLHTSSGANSNRSVLHSGIIGRGLRPVLPPSERNCDAEKQALYL
KALNACCADLEKPNNVEGYSLVSLLLVELVSTDVMYNGLPFPDEEFTRVT
MERDMLIRRAFINSPVLWAVLGLIAGHRPALCYSSVLLRALCATCLHHWR
GKNVNRFQPTAANDELMLCTKKMLQLLAMSQLIPPPLTNLHLIIEHFESA
EIALLLRECIWNYLKDHVPSPALFHVDNNGLHWRNTNTQLAKVPPQYVDP
LRHLMQRKLSTLGPHYHQMFIMGELMEGDSEPDPTARLQIVEID*
BS23031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| omd-PC | 994 | CG9591-PC | 1..994 | 1..994 | 5193 | 100 | Plus |
| omd-PB | 994 | CG9591-PB | 1..994 | 1..994 | 5193 | 100 | Plus |
| omd-PA | 994 | CG9591-PA | 1..994 | 1..994 | 5193 | 100 | Plus |
